Protein TRNT1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
MGP_SPRETEiJ_P0078326	pdb,1ou5,B,#1	30	383	0	90.395
ENSJJAP00000016819	pdb,1ou5,B,#1	30	383	0	89.831
ENSHGLP00100022316	pdb,1ou5,A,#1	30	378	0	88.983
ENSPSIP00000019574	pdb,1ou5,B,#1	1	346	0	78.613
ENSOPRP00000013749	pdb,1ou5,A,#1	1	315	0	76.276
ENSACAP00000005515	pdb,1ou5,B,#1	34	385	0	74.576
ENSMEUP00000004264	pdb,1ou5,A,#1	30	383	0	82.486
ENSSHAP00000022287	pdb,1ou5,B,#1	30	383	0	82.486
ENSPCAP00000001798	pdb,1ou5,B,#1	1	333	0	89.189
ENSPVAP00000008293	pdb,1ou5,A,#1	1	333	0	89.189
ENSMLEP00000018938	pdb,1ou5,B,#1	1	333	0	94.595

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.131	0.387	0.482	0.361	0.478	0.161

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.642628205128205	0.0336538461538462	0.016025641025641	0	0	0	0	0.307692307692308

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.427893560 0.038739082 2.836777217 0.445142514 0.062602884 5.552402496 0.001513867 0.266137707 0.419157697 5.525190390 0.104444674 0.059487022 0.263806885 0.340213110 1.107648985 0.510688537 0.019705768 0.151688292 1.850616331 5.387736071 7.305853834 0.000336623 0.000210167 0.101097993 0.324458273 0.371710430 7.900126522 1.091709289 0.000002523 0.002214831 0.004330326 0.316930202 0.770751951 1.691021285 0.223047983 9.226721695 0.000005031 0.027437563 0.149225432 0.117598179 0.220524814 0.362501159 0.554335897 0.127186155 7.092211202 0.000004833 0.000111913 0.062158497 0.006385873 0.098938355 0.621551315 0.055254912 0.266969137 0.647036025 6.424297202 0.000007145 0.000856518 0.001762419 0.154116168 0.007999065 0.181398507 0.076801932 0.399541151 0.021134791 1.172781091 5.298360838 0.000008653 0.027057678 0.000071166 0.001944900 0.614100851 0.560811106 0.051168701 0.000443311 0.438527897 0.328511490 1.385517491 8.278456012 0.000003775 0.000006346 0.187840740 0.000131129 0.001163123 0.319396347 0.000311962 0.163870039 0.000535462 0.000210112 0.021206690 1.130066371 8.269660546 0.000189733 0.001231161 0.139319346 0.000079465 0.224166838 0.020902889 0.146604592 0.389288754 0.001266554 0.188131019 0.166159241 0.993320896 0.000348290 2.946309987 0.003374141 0.000546688 0.001544676 0.001575049 0.968414985 0.008900456 0.373035110 0.005336873 0.009797084 0.273245643 0.000568241 0.000774301 0.002036174 0.995172288 2.860155885 0.292300313 0.000460718 0.000927355 0.002034664 0.398467560 0.701624338 0.113293801 0.015511108 0.004653949 0.002610335 0.000341090 0.233357915 0.004470305 0.000135918 1.084705714 0.046323890 0.000022863 0.000252177 0.000012206 0.000149776 0.005751106 0.178787623 0.339199083 0.002631350 0.000051647 0.571175291 0.536828264 0.000073520 0.000061846 1.677933070 3.920400574 0.002690438 0.000406380 0.000003177 0.113333814 0.000318465 0.174108528 0.459166740 0.000023438 0.132860894 0.000001250 0.009836767 0.000178031 0.903587232 0.575485371 0.000058208 1.244776509 0.000018471 0.000232474 0.000046876 5.498238299 0.000465806 0.048807138 0.000088510 0.001558058 0.001659862 0.056292299 1.118627196 0.001338644 0.715516170 0.013928365 0.322685275 0.078363464 0.007056661 0.139250242 11.789421102 0.132859047 2.684186477 8.083796899 21.371569288 0.030958400 0.138700000 0.078689000 0.062831500 0.081712800 0.073346800 0.084285900 0.064160600 0.082048600 0.072026400 0.071866000 0.054782800 0.032172300 0.019139500 0.012611900 0.011104400 0.009979560 0.004393480 0.009364310 0.005826060