Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSJJAP00000008853pdb,1xb2,B,#142316090.909
ENSPCAP00000003545pdb,1xb2,B,#143328087.413
ENSPVAP00000011442pdb,1xb2,B,#143318094.928
ENSSTOP00000025650pdb,1xb2,B,#143317092.727
ENSLAFP00000012704pdb,1xb2,B,#143317092.364
ENSOGAP00000010944pdb,1xb2,B,#143318090.58
ENSMOCP00000006453pdb,1xb2,B,#141315089.091
ENSFDAP00000008240pdb,1xb2,B,#143317088.727
ENSMLUP00000005429pdb,1xb2,B,#140314092
ENSMICP00000003474pdb,1xb2,B,#143337085.424
ENSCGRP00000008981pdb,1xb2,B,#142316089.091

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.1170.3680.5150.2090.4570.334

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.392510402219140.04993065187239940.008321775312066570.002773925104022190.008321775312066570.009708737864077670.009708737864077670.51872399445215

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)