Protein TSPO

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMUSP00000037039	pdb,2mgy,A,#1	1	169	7.25e-117	98.817
ENSCGRP00000018471	pdb,2mgy,A,#1	1	169	8e-110	92.899
ENSMOCP00000000574	pdb,2mgy,A,#1	1	169	3.33e-109	91.716
ENSPEMP00000023889	pdb,2mgy,A,#1	1	169	3.06e-107	89.941
ENSNGAP00000017217	pdb,2mgy,A,#1	1	169	5.48e-106	89.349
ENSSTOP00000002569	pdb,2mgy,A,#1	1	169	1.4e-102	85.207
ENSOPRP00000015419	pdb,2mgy,A,#1	1	169	3.66e-102	84.615
ENSCLAP00000024422	pdb,2mgy,A,#1	1	169	7.65e-100	84.615
ENSCAPP00000007020	pdb,2mgy,A,#1	1	169	2.31e-99	84.615
ENSPCOP00000014516	pdb,2mgy,A,#1	1	169	3.92e-99	82.84
ENSMLUP00000008297	pdb,2mgy,A,#1	1	169	1.48e-98	82.249

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.151	0.342	0.507	0.042	0.56	0.398

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.338164251207729	0.0821256038647343	0.0072463768115942	0.00241545893719807	0	0	0	0.570048309178744

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.659649075 0.904535435 3.247087297 0.791268253 0.000000016 2.758475089 0.000000567 0.012764433 0.000093912 4.053913639 0.938006905 0.000006416 0.039708129 0.057121278 0.163661379 3.515474196 0.276334247 0.104333356 0.005737332 6.078018268 9.015649461 0.000000130 0.090390807 0.005151362 0.205961177 0.089480141 13.455930754 0.909766915 0.000000014 0.084894648 0.117178108 0.110220930 0.000002085 0.012086453 0.711842408 12.005858710 0.000000015 0.000000530 0.262014388 0.155618706 0.087692000 0.197895131 1.175503034 0.004644777 14.403697101 0.000000014 0.000002320 0.037552948 0.075751614 0.194519568 0.000461482 0.511800169 0.963967265 0.163468314 8.272311340 0.000000014 0.069606867 0.078719156 0.000000078 0.067316455 0.097488210 0.043422932 0.392754903 0.000033919 0.482268099 12.748283672 0.000000014 0.000000115 0.084812076 0.000000352 0.170566166 0.251207925 0.590676599 0.030161174 0.087768023 1.466804296 0.998199262 10.146670624 0.000000014 0.000000006 0.000002127 0.141142395 0.148902641 0.289599005 0.000001014 0.000000062 0.898392423 0.111206305 0.022289990 2.157369058 19.541517129 0.000000014 0.000000421 0.036502252 0.000000201 0.012429585 0.161503329 0.095939828 0.000000015 0.430201681 0.091166411 0.037798228 2.160604671 0.166981108 22.867814980 0.000000206 0.000000700 0.000058225 0.000000385 0.000257967 1.675451753 0.518441364 0.000008780 0.092600533 2.303077138 0.005332250 0.623443466 0.086381204 7.193093533 24.687146863 0.000005889 0.000001547 0.826995226 0.019125752 0.514588422 1.833857427 0.796403886 0.000000232 0.000000353 0.000002642 0.000000181 0.000000529 0.000016853 3.998507009 1.150671745 21.776016378 0.000000014 0.000000001 0.000000072 0.132860432 0.241862692 0.000000006 1.350015360 0.000000071 0.203327992 0.789591296 1.608222342 0.000003063 2.477065439 3.472725262 1.115357250 8.395927571 0.000001365 0.000000014 0.000000001 0.000000068 0.000000078 0.721195003 0.000000081 0.000000171 0.000000215 0.837642522 1.754643604 0.071300894 0.577297195 2.236799475 2.952168984 4.533706364 0.053592148 0.000047348 19.700106187 0.000000014 0.000000003 0.072024474 0.000000008 0.000000104 0.306715543 0.000000099 0.445357174 0.251505144 0.000550311 0.659640500 1.525606087 0.745170095 3.466587409 1.832751144 17.949260627 3.355159941 11.652910449 44.581813123 0.007371950 0.137587000 0.148730000 0.137238000 0.082493500 0.051803700 0.052084000 0.042022900 0.039879900 0.035845000 0.064862300 0.044473800 0.038396200 0.036169000 0.031060900 0.014458200 0.006571490 0.004435570 0.006038090 0.018479200