Protein TST

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMUSP00000055743	pdb,1orb,A,#1	2	293	0	90.068
ENSOGAP00000020706	pdb,1orb,A,#1	2	294	0	89.078
ENSNGAP00000002834	pdb,1rhs,A,#1	2	294	0	90.102
ENSNGAP00000002834	pdb,1boi,A,#1	9	294	0	89.86
ENSSTOP00000023339	pdb,1boh,A,#1	2	294	0	89.761
ENSPCOP00000009694	pdb,1dp2,A,#1	2	294	0	90.444
ENSCAFP00000002185	pdb,1dp2,A,#1	66	357	0	91.438
ENSNGAP00000002834	pdb,1rhd,A,#1	2	294	0	89.078
ENSTSYP00000014913	pdb,1orb,A,#1	2	294	0	91.809
ENSGGOP00000032316	pdb,4jgt,A,#1	31	308	0	98.561
ENSDNOP00000017845	pdb,1boh,A,#1	2	293	0	89.041

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.147	0.524	0.329	0.143	0.668	0.189

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.296923076923077	0.158461538461538	0	0	0.00307692307692308	0.00153846153846154	0.00461538461538462	0.535384615384615

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.875791542 0.127596747 1.558647200 0.008792914 0.079719989 3.269062538 0.389370826 0.362685146 0.063866638 6.624383634 0.022522574 0.116676541 0.150055992 0.272775393 0.190165710 0.000354352 0.153798138 0.379749860 0.291598032 6.539736230 7.651177868 0.003230400 0.062786571 0.212682956 0.536963083 0.341472477 7.957843328 0.484421795 0.034746637 0.138432783 0.135299480 0.305027766 0.001378397 0.343162374 0.036492984 10.779763644 0.001425741 0.056613204 0.291041704 0.009010286 0.197390631 0.597206171 0.917415630 0.316375869 7.784938223 0.007115639 0.026453872 0.055089674 0.074491721 0.120474552 0.520319498 0.136450758 0.385563670 0.143590233 6.665274940 0.000000574 0.059244534 0.143911530 0.288523106 0.010725891 0.259313382 0.292821083 0.705788519 0.283510057 0.448211725 6.778197470 0.000000322 0.000474589 0.046518669 0.025400259 0.000025242 0.062064929 0.024051389 0.008187297 0.785662448 0.423437136 0.643095533 10.795159019 0.044716212 0.046774651 0.156085285 0.000230727 0.358771630 0.000017895 0.230019479 0.735650865 0.047808318 0.114331755 0.756661330 0.138901224 14.218338988 0.208069408 0.000000073 0.000003962 0.530068408 0.595604396 0.000000169 0.000000120 0.170051432 0.521939360 0.000006686 0.176217995 0.635987032 0.016347074 13.497153167 0.000000002 0.000246168 0.000000182 0.018228261 0.565045114 0.002798725 0.000004965 0.240552383 0.400280074 0.376765898 0.451857085 1.239129384 0.018999163 1.889594414 2.520705754 0.238489106 0.000000001 0.119771326 0.013595400 0.213051846 0.000000613 0.656271556 0.545448590 0.000006812 0.013472827 0.036793539 0.000714386 1.376736999 0.037774237 5.446068029 3.805929110 0.000000002 0.165134010 0.000004722 0.256629003 0.060680169 0.267695462 0.001483057 0.181217191 0.010861407 0.466751474 0.609609754 0.761776165 1.166315007 0.000212564 2.992951555 4.333563144 5.323392932 0.000000002 0.000000447 0.000001960 0.000001659 0.000017030 0.234239834 0.000526547 0.000000498 0.000048635 0.444320011 0.002522466 2.044397681 2.150594878 9.817084124 3.452199418 0.000082317 0.033946594 21.408976548 0.000000028 0.000000105 0.347605068 0.000247286 0.061311516 0.000001503 0.000032908 0.677709025 0.976429631 0.657132644 0.000055624 0.000004993 0.676276897 3.405613221 0.722942309 1.449265958 6.641688063 2.975363498 13.783389210 0.042859400 0.141780000 0.081618200 0.074245700 0.060014500 0.067405700 0.069151100 0.056482500 0.066553900 0.071613700 0.079132100 0.062061800 0.043034000 0.025607400 0.013194400 0.012329000 0.010710500 0.007917520 0.006493490 0.007795110