Protein TUFM

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSDNOP00000030574	pdb,1d2e,A,#1	58	454	0	93.703
ENSLACP00000009342	pdb,1d2e,D,#1	55	447	0	80.662
ENSACAP00000005281	pdb,1d2e,C,#1	63	458	0	82.872
ENSHGLP00100005396	pdb,1d2e,C,#1	87	383	0	91.722
ENSDNOP00000030574	pdb,1d2e,B,#1	58	454	0	93.703
ENSOPRP00000002141	pdb,1d2e,B,#1	59	455	0	82.62
ENSDARP00000134914	pdb,1d2e,B,#1	50	442	0	77.863
ENSTRUP00000020761	pdb,1d2e,C,#1	50	444	0	78.338
ENSECAP00000017340	pdb,1d2e,B,#1	54	450	0	97.733
ENSETEP00000007804	pdb,1d2e,A,#1	58	398	0	81.525
ENSETEP00000007804	pdb,1d2e,D,#1	58	398	0	81.525

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.037	0.12	0.844	0.347	0.268	0.386

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.179841897233202	0.348814229249012	0.075098814229249	0.0513833992094862	0.0158102766798419	0.00494071146245059	0.00494071146245059	0.319169960474308

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.640611681 0.009217322 2.284307202 0.003979086 0.000603412 6.146941240 0.363548984 0.139405282 0.216204266 5.266397876 0.032802681 0.032074652 0.173558626 0.091901787 0.432274149 0.000845724 0.197105427 0.393260481 0.432468934 5.405253101 7.317398401 0.000000729 0.012001594 0.156040922 0.161575350 0.119693860 6.894652639 0.478971915 0.002852429 0.042213697 0.003088053 0.188440701 0.232031624 1.179479244 0.243341940 8.589484139 0.100325902 0.001151216 0.000139454 0.056710115 0.209673228 0.416371878 0.189407585 0.325112706 8.851289940 0.000000007 0.000000604 0.097524336 0.097139802 0.092855018 0.279644882 0.140658716 0.296382516 0.417826061 8.393403571 0.008675965 0.033061066 0.018015841 0.050328728 0.061554412 0.211749636 0.057070706 0.104608463 0.277984902 0.199312686 7.421161995 0.000000004 0.007956678 0.080252087 0.019554842 0.070900691 0.151724528 0.106739325 0.596988438 0.319564011 0.211505257 0.354197903 8.645511728 0.000000004 0.012823456 0.249880603 0.033583739 0.369734298 0.066038518 0.270148878 0.302580423 0.026333759 0.733960117 0.132061604 0.490525467 11.349047480 0.000000004 0.040407292 0.000000001 0.000210351 0.018197595 0.000091268 0.537754410 0.000000829 0.346297985 0.328899544 0.258554704 0.185952882 0.711316890 12.696355897 0.000000004 0.000000001 0.302406789 0.000000081 0.057400290 0.471570489 0.360822593 0.010832109 0.000009205 0.209368558 0.935332464 0.025031693 0.861830065 2.378711432 6.818987022 0.000000004 0.033170860 0.000000001 0.000000241 0.000057244 0.144197506 0.298495558 0.000013665 0.000026867 0.179514752 0.596106312 0.248586705 1.219375871 0.000001125 3.789476435 14.124608755 0.000000004 0.158360019 0.000000001 0.000006929 0.006559051 0.006145032 0.680673342 0.103638213 0.000000018 0.000000001 0.632264505 0.172597854 0.000000416 0.703947500 5.985477028 0.000013561 6.634221562 0.000000004 0.113199556 0.230632528 0.005870440 0.000001533 0.000015084 0.000001359 1.164863418 0.283854617 0.000000010 0.000000757 0.324328382 0.663436142 2.020582869 0.002508647 2.440080722 2.479354796 13.495437076 0.194812028 0.000000012 0.005878627 0.157812193 0.000099793 0.000000604 0.253114123 0.132361095 0.001486284 0.917354957 0.015069807 0.929831133 0.606121186 2.658899084 0.005309728 0.000000067 3.360298196 2.325433100 21.282341238 0.027216800 0.144270000 0.070562900 0.070711900 0.095825300 0.074318900 0.083000900 0.067054900 0.072286300 0.071699400 0.073632000 0.065945200 0.038466400 0.014963900 0.006887020 0.006511260 0.004507100 0.003244630 0.003307310 0.005588310