Protein TXN2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
MGP_CAROLIEiJ_P0038811	pdb,1uvz,F,#1	59	166	2.02e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1w89,F,#1	59	166	2.02e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1w4v,F,#1	59	166	2.02e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1w89,D,#1	59	166	2.71e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1w4v,D,#1	59	166	2.71e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1uvz,D,#1	59	166	2.71e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1w4v,B,#1	59	166	2.9e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1w4v,A,#1	59	166	2.9e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1w89,E,#1	59	166	2.9e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1w4v,E,#1	59	166	2.9e-75	98.148
MGP_CAROLIEiJ_P0038811	pdb,1uvz,A,#1	59	166	2.9e-75	98.148

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.093	0.22	0.688	0.188	0.334	0.478

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.343042071197411	0.184466019417476	0.0129449838187702	0	0	0.00323624595469256	0.00323624595469256	0.453074433656958

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.037512957 0.000000011 1.230195211 0.271756645 0.175208073 3.825092761 0.000000019 0.151775243 1.015038655 3.824065628 0.000003032 0.009755987 0.000096572 0.311067595 1.981512040 0.000189507 0.012302614 0.349786580 1.149360616 1.920141878 3.610724499 0.004046236 0.007684003 0.065829235 1.319115375 0.744975643 3.248580699 1.951647434 0.000810096 0.000000007 0.002490831 0.535223028 0.189418454 1.993292693 0.524884068 5.451784774 0.000082963 0.000157944 0.082724747 0.223724417 0.163863764 0.373576469 1.109672580 1.214466432 4.486729113 0.129325323 0.000000001 0.000009708 0.088242393 0.152182396 0.575284283 0.284212364 0.879366418 1.316236221 3.250153701 0.256355983 0.000000001 0.038432921 0.188076162 0.048304516 0.008104609 0.069119701 0.444312299 0.770224637 0.536031228 1.679479726 0.000000585 0.019225968 0.132125679 0.000020831 0.011126922 0.000116366 0.025889846 0.014925730 0.017258150 0.428800953 0.612972738 4.648637231 0.000000009 0.000000005 0.000000357 0.150809345 0.002991473 0.057325052 0.192362535 0.000002921 0.127597493 0.002480089 1.829639793 1.330095288 1.240451029 0.000000009 0.000000001 0.000000002 0.000000001 0.000000001 0.000000001 0.000000001 0.000033172 0.093926900 0.000000001 0.246252587 0.000000046 2.849628075 4.231070805 0.000000061 0.096637726 0.000268978 0.000118104 0.134378715 0.000067659 0.358480194 0.000065801 0.000001729 0.000000589 0.000000499 0.000000337 1.408384765 0.000000013 2.544067962 0.000000009 0.049900030 0.000000002 0.000000001 0.223604100 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 0.420385935 0.000000002 0.000000004 0.000000010 0.000000017 0.000000835 0.000000002 0.000002335 1.922332171 0.000003959 0.000000118 0.000001000 0.000001043 0.000000033 0.000000060 0.000000369 0.000000037 0.000000009 0.000000027 0.000000010 0.001071730 0.000000012 0.000000009 0.000000001 0.000000002 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000424 0.024440167 1.653619283 8.680567368 5.490062283 0.000000017 0.000000012 0.000000089 0.000000078 0.338535164 0.000000031 0.000226558 0.029031050 0.000029524 0.652251273 0.422803454 0.000003056 0.000104531 0.000026265 0.297796535 4.813963019 0.440523060 0.000000010 0.000003774 3.201016765 0.000000266 38.191195420 0.010785900 0.105732000 0.060936300 0.077723300 0.088414300 0.094553600 0.096780800 0.085848400 0.086708600 0.078236300 0.064504500 0.050184600 0.040263500 0.024104300 0.009643060 0.005880210 0.008312640 0.001124690 0.006348060 0.003914780