Protein TXNRD2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSMOCP00000010277	pdb,1grg,A,#1	41	429	0	70.435
ENSLACP00000017516	pdb,1h6v,A,#1	109	581	0	72.899
ENSSTOP00000010257	pdb,2zzb,C,#1	39	522	0	56.674
ENSAPLP00000011800	pdb,3qfb,A,#1	111	598	0	77.459
ENSPPYP00000015043	pdb,2x99,A,#1	1	569	0	54.087
ENSOPRP00000008260	pdb,2zzb,A,#1	93	556	0	87.607
ENSLACP00000017516	pdb,3eao,E,#1	109	581	0	72.899
ENSFDAP00000007699	pdb,1h6v,C,#1	20	480	0	56.034
C06G3.7a	pdb,2x8h,A,#1	117	656	0	52.206
ENSAMEP00000007097	pdb,2j3n,B,#1	137	610	0	92.616
ENSGALP00000044523	pdb,3eao,C,#1	136	604	0	77.825

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.117	0.401	0.482	0.129	0.394	0.477

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.18716577540107	0.117647058823529	0.0380273321449792	0.0142602495543672	0.0095068330362448	0.0023767082590612	0.0047534165181224	0.626262626262626

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.827513819 0.211891433 1.271295703 0.010993487 0.535159143 2.882244204 0.501462045 0.881575283 1.131124819 2.022515569 0.068939743 0.221896494 0.495097760 0.593511902 1.382991377 0.346545038 0.748120353 0.801549052 1.246636596 2.969511349 2.697024040 0.006383118 0.115237671 0.271445892 0.458078119 1.066726137 4.086114089 1.008374171 0.003357572 0.149740330 0.366685439 0.611983704 0.859271484 1.347643866 1.041283509 4.250441997 0.000314022 0.066569505 0.143656373 0.370975248 0.778395282 0.626502520 1.027473020 1.224062625 3.937935930 0.003145348 0.067399195 0.200722184 0.257186533 0.725120428 0.854584825 0.326829181 1.054985831 1.773277673 4.204639710 0.002587539 0.058826961 0.102848586 0.154330294 0.267561701 0.540552369 0.808282931 0.964408012 1.147738027 1.797546605 4.906261846 0.006243208 0.000739474 0.089636324 0.147187964 0.656164139 0.605971877 0.588266745 0.508717507 0.699981526 1.194468592 2.555826225 5.527427752 0.000000402 0.057832280 0.102955125 0.055678667 0.517155318 0.176400737 0.690703785 0.348473446 0.618884020 1.040712070 0.739369385 2.444298326 8.144120794 0.037636451 0.009146780 0.075917472 0.115189500 0.901162652 0.006370287 0.533305012 0.262094146 0.389108564 0.398176129 0.774748520 1.028554182 1.736371418 4.821224689 0.000006773 0.053141934 0.099871597 0.007209937 0.710847458 0.295801211 0.443899443 0.257027838 0.242169471 0.359598245 0.546184495 0.484318016 0.730208061 1.212763189 5.229159413 0.000019293 0.059550486 0.004616467 0.137118911 0.547434830 0.279540063 0.825690356 0.371543694 0.191549771 0.445831973 1.274346248 0.912912800 1.817206040 0.658530340 0.506875023 6.499375412 0.000000034 0.012862285 0.012361516 0.002895758 0.874220438 0.120668636 0.393878594 0.416492329 0.037967693 1.059654513 0.009977751 0.215536105 0.833156581 2.089463212 0.000598003 2.299151317 7.166557115 0.000001033 0.023754978 0.000230365 0.374725333 0.530329071 0.251923055 0.488246345 0.007901839 0.691352063 0.141767052 0.988445279 1.249848193 2.228056117 1.028304342 1.732629342 2.555118975 4.378419099 13.399366056 0.000025297 0.044501476 0.083289185 0.353764016 0.408376450 0.013577624 0.314339101 0.488311843 0.038681062 1.044940582 1.012827916 1.556003492 1.396637736 1.822748413 0.383852222 1.018737650 1.558977043 1.533843003 12.575206710 0.025580600 0.143644000 0.075465500 0.066398500 0.100890000 0.070148800 0.089214800 0.055543400 0.061707200 0.065223900 0.062519900 0.055662600 0.042055000 0.023823200 0.016657400 0.013208700 0.009478010 0.008111130 0.005396460 0.009271060