Protein UQCRC1

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSXMAP00000002298	pdb,3l72,A,#1	33	475	0	64.108
ENSDORP00000008402	pdb,4d6t,A,#1	36	479	0	87.387
ENSNLEP00000008051	pdb,3h1l,N,#1	37	465	0	68.707
ENSACAP00000000857	pdb,4d6u,A,#1	1	384	0	65.365
ENSAPLP00000001401	pdb,3l71,A,#1	16	458	0	92.325
ENSDORP00000008402	pdb,3l71,A,#1	36	477	0	71.719
ENSGMOP00000012110	pdb,3l72,A,#1	30	472	0	62.077
ENSONIP00000025624	pdb,1sqb,A,#1	33	478	0	63.453
ENSMOCP00000016527	pdb,3h1j,A,#1	36	477	0	71.493
ENSOPRP00000010467	pdb,1sqx,A,#1	35	480	0	77.13
ENSSARP00000003231	pdb,3l75,A,#1	71	477	0	71.99

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.083	0.377	0.541	0.207	0.674	0.119

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.531034482758621	0.124137931034483	0.00275862068965517	0.00137931034482759	0.00137931034482759	0.00137931034482759	0.00275862068965517	0.335172413793103

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.309943989 0.000335334 1.375225706 0.000000006 0.040202368 3.660940189 0.072370507 0.434107454 0.464262204 3.803270935 0.090047571 0.056877846 0.190303343 0.275465869 0.829888613 0.414951857 0.657551711 0.341243977 0.679984376 5.139542446 6.348195858 0.000000006 0.016756914 0.041353402 0.455768491 0.526346067 7.323251715 1.293974297 0.000000006 0.000108117 0.081570040 0.181361482 0.301160561 1.394919441 0.825328184 10.555436095 0.000000006 0.024124938 0.023324704 0.005867835 0.301758350 0.433233959 0.916631032 0.413929839 8.292713458 0.000000006 0.025547808 0.000007787 0.000004391 0.298034884 0.605557558 0.095768329 0.551783982 0.679609646 9.097296371 0.000000006 0.022451724 0.125366151 0.070797357 0.091745177 0.092805184 0.943065039 0.242123068 0.214234622 0.054205907 9.754683903 0.000000006 0.016359412 0.101256926 0.032980184 0.318493939 0.020055956 0.077239120 0.010268431 0.340420136 0.010623245 0.297715599 10.507385407 0.000000006 0.000003908 0.156982337 0.001209594 0.251210585 0.069365684 0.790747638 0.000888901 0.292812623 0.020530594 0.171655730 0.006520007 11.894638256 0.000000006 0.026528477 0.000000001 0.000000001 0.108690034 0.010802799 1.080719360 0.081176634 0.000000252 0.000000049 0.054883384 0.604275708 3.321282647 8.461985163 0.000000006 0.000000015 0.279258772 0.000002677 0.276145137 0.082039038 0.639408465 0.013036232 0.572514281 0.133588876 0.000228180 2.062334679 0.001492327 1.201260144 18.206549684 0.000000006 0.000021915 0.000002533 0.146562647 0.294878358 0.000001509 0.819477205 0.029926331 0.950136068 1.571726108 0.579767669 0.391958681 0.018838901 1.946683411 0.000048812 12.928393125 0.000000006 0.017353402 0.000032291 0.000000601 0.706055427 0.000005020 0.866429869 1.035799850 0.000000002 0.000000002 0.000000404 4.763242314 0.000419543 0.000000296 9.092652407 0.035900227 20.974011976 0.000000006 0.276742032 0.034880071 0.953372527 0.001030923 0.758955845 0.000885247 0.000981631 0.000052807 1.804279255 0.054166155 7.177863732 3.028385096 0.000718509 0.044947741 0.000167154 0.002245685 53.604979905 0.000000006 0.000000004 0.001173593 0.000003363 0.598866952 0.550642441 0.367923075 0.673146896 0.000005378 0.000139370 0.000485301 0.000726988 0.294623162 0.000150781 3.204516346 0.000006888 9.295239651 6.326051954 245.438366677 0.016585900 0.192175000 0.092209100 0.084997100 0.119942000 0.076310500 0.086994000 0.059061700 0.061513400 0.053102700 0.048826800 0.039090600 0.029149100 0.013776200 0.008557360 0.005227850 0.004407030 0.002366310 0.001511520 0.004196070