Protein UQCRC2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
ENSGACP00000015263	pdb,1sqx,B,#1	38	459	0	60.664
ENSTGUP00000009366	pdb,3h1j,B,#1	37	457	0	83.848
ENSECAP00000018932	pdb,3h1j,B,#1	33	453	0	73.397
ENSFCAP00000007194	pdb,1bgy,N,#1	35	453	0	93.317
ENSSHAP00000001321	pdb,1sqb,B,#1	29	453	0	80
ENSCCAP00000018300	pdb,1ntm,B,#1	21	368	0	86.207
ENSAMXP00000009173	pdb,3h1k,B,#1	29	451	0	66.588
ENSMMUP00000060037	pdb,3l75,O,#1	33	434	0	66.983
ENSLOCP00000009919	pdb,3l71,O,#1	55	472	0	72.488
ENSAMXP00000009173	pdb,3l74,O,#1	34	451	0	66.986
ENSPCAP00000015614	pdb,3l75,O,#1	33	426	0	65.228

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.074	0.312	0.614	0.031	0.463	0.506

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.33252131546894	0.236297198538368	0.0438489646772229	0.0194884287454324	0.00730816077953715	0.00609013398294762	0.00365408038976857	0.350791717417783

Loading ...

Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

1.100852530 0.002604444 1.621682433 0.062230365 0.019655652 4.079439009 0.000966506 0.215193470 0.188529877 6.346033916 0.000029612 0.003196618 0.121565379 0.182251780 0.185690661 0.152409759 0.260896509 0.441025571 0.484712154 6.793755793 7.766072282 0.000083737 0.008167400 0.065470929 0.120066031 0.457514039 9.217619792 0.841779334 0.000000009 0.044818246 0.041422189 0.213550891 0.220457684 0.319045283 0.569805239 8.798307295 0.000000009 0.019982427 0.084652074 0.081266807 0.138971550 0.544518187 0.324124245 0.363876787 8.492942561 0.000000009 0.005133228 0.000084969 0.054587975 0.153899449 0.365527393 0.133576382 0.217378072 0.139947712 8.757439516 0.000000009 0.027795789 0.045450040 0.097482251 0.011382026 0.116841582 0.297061862 0.311093122 0.297785169 0.174780250 8.276182776 0.229486668 0.000000013 0.068595893 0.020041834 0.046430616 0.030011621 0.306885386 0.258584878 0.243535555 0.121178851 0.044527932 11.651582818 0.000000009 0.024381049 0.038792290 0.000358653 0.313497238 0.000377990 0.121778615 0.000400013 0.000002328 0.491719068 0.231256872 0.004486214 7.746701536 0.000000009 0.000000001 0.000000269 0.000001566 0.288019972 0.000342898 1.068017680 0.000000483 0.409065092 0.007171399 0.272696589 0.156953179 0.242265507 3.502726044 0.000000009 0.000000048 0.000000030 0.000001731 0.121534656 0.000000459 0.302820949 0.000084450 0.000064381 0.200923033 0.351935329 0.962591325 0.194201381 3.201435332 25.525544638 0.000000009 0.151812618 0.000000153 0.000134701 0.061028450 0.000002164 0.746062539 0.000001025 0.343467200 0.112423081 0.089673298 0.000458031 2.299593154 1.909521126 0.000000119 2.947878336 0.000000009 0.036759351 0.000000001 0.000000001 0.536903475 0.000000103 0.333778055 0.472606148 0.000000013 0.000040243 0.645828052 0.000000384 0.168737337 0.000000285 0.000000726 32.799821445 97.543063366 0.000000009 0.187458941 0.000000003 0.000000147 0.165376770 0.392239854 0.942997550 1.090618452 0.012076797 0.000118385 0.000007293 0.000006131 3.096297799 0.000001943 5.256029808 0.000158269 5.737789488 62.452531704 0.000000009 0.085904174 0.334464911 0.000001684 0.376725289 0.126886903 0.000057898 1.497079156 0.351531637 0.091699716 2.198502620 0.201493849 1.273329820 0.143290129 27.701314027 0.000173704 0.000000033 6.496367402 0.000018304 0.011026000 0.182664000 0.088372200 0.080174800 0.088043200 0.077447000 0.080724600 0.065717300 0.070953500 0.071308400 0.066663100 0.045633800 0.030552100 0.014728300 0.007541700 0.006810220 0.004516600 0.002699170 0.001405850 0.003018010