Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSDARP00000066372pdb,3emn,X,#11283085.512
ENSONIP00000021759pdb,4c69,X,#17289087.986
ENSONIP00000021759pdb,3emn,X,#17289087.986
ENSAMXP00000009240pdb,2k4t,A,#11283087.633
ENSGALP00000059625pdb,4bum,X,#114296089.046
ENSACAP00000002764pdb,2jk4,A,#156336093.95
ENSTRUP00000018908pdb,2k4t,A,#116298086.572
ENSFALP00000008242pdb,2k4t,A,#11283093.64
ENSLACP00000019651pdb,2k4t,A,#119303087.719
ENSORLP00000008224pdb,4bum,X,#113296092.254
ENSFALP00000007247pdb,4bum,X,#122304086.572

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0770.1370.7860.2120.2890.499

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2055214723926380.08486707566462170.001022494887525560.0010224948875255600.004089979550102250.004089979550102250.699386503067485

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)