Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSGACP00000027612pdb,3emn,X,#117299085.159
ENSTNIP00000019181pdb,2k4t,A,#117299086.572
ENSLOCP00000005515pdb,4bum,X,#110292092.58
MGP_PahariEiJ_P0033361pdb,3emn,X,#112830100
ENSLACP00000019651pdb,3emn,X,#119303086.667
ENSLOCP00000012579pdb,4c69,X,#116298091.519
ENSAMXP00000009240pdb,2jk4,A,#12283087.589
MGP_PahariEiJ_P0033361pdb,2k4t,A,#11283098.587
ENSGMOP00000010170pdb,2jk4,A,#14284085.106
ENSPSIP00000005503pdb,2jk4,A,#12283095.035
ENSLACP00000019651pdb,2jk4,A,#120303087.676

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0480.1210.8310.1850.3120.503

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.2266187050359710.11151079136690600.003597122302158270.004796163069544360.009592326139088730.004796163069544360.639088729016787

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)