Protein YARS2

Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein ID	Structure	Start	End	E value	Bit score
FBpp0072334	pdb,1jil,A,#1	40	363	9.68e-91	43.21
ENSPFOP00000012286	pdb,1jil,A,#1	44	377	3.43e-89	43.582
FBpp0072334	pdb,1jik,A,#1	40	359	4.06e-89	43.125
FBpp0072334	pdb,1jij,A,#1	40	359	4.06e-89	43.125
FBpp0072334	pdb,1jii,A,#1	40	359	4.06e-89	43.125
ENSLOCP00000020627	pdb,1x8x,A,#1	34	365	7.99e-89	41.742
ENSPFOP00000012286	pdb,1x8x,A,#1	40	371	2.93e-88	42.342
ENSGACP00000004911	pdb,1jil,A,#1	30	365	9.09e-88	43.235
ENSLOCP00000020627	pdb,1vbm,A,#1	38	365	9.78e-88	41.641
ENSLOCP00000020627	pdb,1vbm,B,#1	38	365	9.78e-88	41.641
ENSPFOP00000012286	pdb,1jik,A,#1	44	373	1.61e-87	43.505

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.04	0.084	0.876	0.361	0.269	0.37

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.554160125588697	0.189952904238619	0.0957613814756672	0	0.00156985871271586	0.00156985871271586	0.00156985871271586	0.15541601255887

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V

Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)

0.000998931 0.041184776 2.311901488 15.607864495 0.000000334 6.050769660 146.638218080 0.017677695 0.116389540 5.511716143 10.072936846 0.013498703 0.292622828 0.131263919 0.007172237 29.175427591 0.046540747 0.005597807 0.232621367 6.656226939 8.654216068 86.136484279 0.000004071 0.000000029 0.000051214 0.060592584 8.555162227 0.033208721 9.919410990 0.040119594 0.000350117 0.012745643 0.251565187 0.237740932 0.246050606 7.862389687 9.932440351 0.008042013 0.000000346 0.046018667 0.003334860 0.357975975 0.016987310 0.007371996 7.113709470 69.775329698 0.000000205 0.000193562 0.001865730 0.218773190 0.036236839 0.000119929 0.575743350 0.013852124 6.112023110 0.287267764 0.014406979 0.042394857 0.000000003 0.000009041 0.039870115 0.172217080 0.000154224 0.000446594 0.001250306 7.036683080 1.425232840 0.059782342 0.000001209 0.000000077 0.105462177 0.407889428 0.000001771 0.002121510 0.500814266 0.195868742 0.000082370 12.017661525 0.000068938 0.000000042 0.000513346 0.176469377 0.000000009 0.000000012 0.000000001 0.000000001 0.113180512 0.000163257 0.002797494 0.000002522 16.524485228 0.000077834 0.000000001 0.010719626 0.857509800 0.000000005 0.000000006 0.000000108 0.000000001 0.000000001 0.000000001 0.335824714 0.395560980 0.684416751 64.245019910 0.010844427 0.000000001 0.005203643 0.093247398 0.000003030 0.341310827 2.647508788 0.000000001 0.000000001 0.000000001 3.011007838 0.000000298 0.000000005 4.675007830 634.445197914 0.000068938 0.000000001 1.138263226 0.000000001 0.000000001 0.000000006 0.000000001 0.467983436 0.000000001 0.000000001 0.000000001 0.019952685 18.285475802 0.000000012 35.172707926 0.000016342 0.000068938 0.000000001 0.000000001 0.900245961 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000001 0.000000002 4.127405060 0.000000012 0.000000043 0.000000240 0.000000173 0.004567625 0.000000001 0.000000259 0.093421182 0.000004626 0.000000004 0.000000001 0.000000001 0.000000015 0.025057514 0.543096064 0.000000052 0.098478944 75.118940497 0.000000703 0.000000240 0.000000173 0.000000192 2807.337805139 0.000006505 0.000076862 3.009067008 2.138710119 0.216026133 0.256462427 0.096182894 0.013887093 4.497607211 4.854625448 0.002982430 0.197464552 0.000687804 0.000000344 0.000005728 0.000000173 0.000000192 9173.235775085 0.000001451 0.160711000 0.084901100 0.082574100 0.097160900 0.076837000 0.083405200 0.077325600 0.079212400 0.086196500 0.085802500 0.054570600 0.018809300 0.008046040 0.002344710 0.000416447 0.000577424 0.000520175 0.000190792 0.000396680