Results of BLAST Screening for sufficient 3D structure homologs in Scratch-1D dataset

Protein IDStructureStartEndE valueBit score
ENSONIP00000023508pdb,4eiw,C,#12857228.89e-12448.344
ENSONIP00000023508pdb,4eiw,E,#12857228.89e-12448.344
ENSONIP00000023508pdb,4eiw,A,#12857228.89e-12448.344
ENSONIP00000023508pdb,2dhr,A,#12857229.08e-12448.344
ENSONIP00000023508pdb,2dhr,C,#12857229.08e-12448.344
ENSONIP00000023508pdb,2dhr,E,#12857229.08e-12448.344
ENSXMAP00000006951pdb,4eiw,C,#12867232.62e-12347.903
ENSXMAP00000006951pdb,4eiw,A,#12867232.62e-12347.903
ENSXMAP00000006951pdb,4eiw,E,#12867232.62e-12347.903
ENSACAP00000007857pdb,2dhr,A,#12777132.81e-12348.009
ENSACAP00000007857pdb,2dhr,C,#12777132.81e-12348.009

Alignment variation features

Conservative sites proportionIntermediate sites proportionVariable sites proportion Conservative sites heterotachy weightIntermediate sites heterotachy weightVariable sites heterotachy weight
0.0330.0760.8910.3050.3490.346

Site diversity ≤ 0.1250.125 < Site diversity ≤ 0.250.25 < Site diversity ≤ 0.375 0.375 < Site diversity ≤ 0.50.5 < Site diversity ≤ 0.6250.625 < Site diversity ≤ 0.75 0.75 < Site diversity ≤ 0.875Site diversity > 0.875
0.3606853020739410.273219116321010.01893597835888190.02975653742110010.03336339044183950.02073940486925160.01442741208295760.248872858431019

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Predicted (by scratch-1d 1.1) residue solvent accessibilities coding: -5(unknown)=A, 0=R, 5=N, 10=D, 15=C, 20=E, 25=Q, 30=G, 35=H, 40=I, 45=L, 50=K, 55=M, 60=F, 65=P, 70=S, 75=T, 80=W, 85=Y, 90&95=V



Empirical model for relative rates of residue solvent accessibilities changes (in PAML format)