Protein ACADS

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	158.465556487001	0
Primates and Rodents clades	7.87031354359988	0.09645

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.466	0.277	0.257	0.53	0.247	0.223

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.50609756097561	0.0365853658536585	0.00457317073170732	0.00152439024390244	0	0.00762195121951219	0.00304878048780488	0.440548780487805

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.665682199 0.068462657 0.517047447 0.614184543 0.001281602 4.652639253 1.743798967 2.451598515 0.000119479 1.192842995 0.125395155 5.979951257 1.251600215 0.855981177 0.002531235 0.869761196 0.027403568 0.410291844 9.655522610 0.033401269 2.694459235 2.167975299 1.128441659 4.053209642 1.118281454 0.465626635 0.034470308 0.509681151 0.412091587 4.858944242 6.947935943 0.938117475 5.927637414 6.630716784 1.016645796 1.081292912 0.011479182 0.001661372 0.019825519 0.000246759 1.042530644 0.192284211 0.000024037 0.013776334 0.499053030 0.261671627 0.797090115 0.286637506 0.029298825 1.257862779 0.777563285 0.000600813 0.240869359 0.041966329 2.562868116 0.374815252 5.950855344 1.077487242 0.152919103 0.014150320 4.632061723 0.922585300 0.462941855 0.028116110 0.007256985 0.315876748 0.673075541 0.374901510 0.000010413 0.000004980 0.000068878 0.413604669 0.145052440 0.022942072 0.000075526 1.684971355 4.565124602 1.142565757 0.022829296 0.000084246 0.000004716 0.000006597 1.313314989 0.259666481 0.000000162 0.175828708 1.916953795 0.003300454 2.950546286 0.177912384 0.094917453 1.595718293 0.824711425 1.697228965 0.437199140 0.000088439 0.158380516 0.484484850 0.087073769 0.964799231 0.000012972 0.781616099 0.750309452 0.000012454 0.000000087 5.886080605 1.343337652 4.964951493 0.555026830 3.902362814 0.471063668 0.761008181 4.083865152 0.123766455 0.424350783 0.110584814 0.360388876 0.810466833 1.011183682 1.088499491 2.729703377 0.206541372 2.246841629 0.348940614 1.312373502 0.203530358 0.147143148 0.223112953 0.000416952 0.997603411 0.631532527 0.567027816 2.299349505 0.027323477 0.817360668 6.503640924 0.430873448 2.352704687 1.159000056 0.763504316 11.996043026 0.269634724 0.167394684 1.773579623 0.000087926 0.594362512 0.559756178 0.001438987 0.665224430 1.799515635 0.001052819 0.041899152 0.915476083 0.001019356 0.002209646 1.187491488 0.277567435 0.000189138 0.000009632 0.000000023 0.014708049 5.981038519 0.000132988 0.430963106 0.266102470 0.246487448 12.686122823 0.000000012 0.025294752 0.451550311 2.328627726 2.924586883 0.383485024 0.000275291 0.658060334 1.473335911 0.280432417 0.274971980 1.004756116 0.021307039 15.723570833 3.597665656 0.228499814 4.211907681 1.802724866 0.165126414 0.170581591 1.970453112 0.276599951 0.241847257 0.116916000 0.068153900 0.024965400 0.041651500 0.021986500 0.047139700 0.060850200 0.055360300 0.018110400 0.047233800 0.105897000 0.061479700 0.033605200 0.031876800 0.042036400 0.078345500 0.055505000 0.014819200 0.025107500 0.048960000