Protein AMT

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	246.876492849202	0
Primates and Rodents clades	58.134279803	7.151e-12

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.389	0.304	0.307	0.407	0.305	0.288

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.5	0.0887573964497041	0.00739644970414201	0.0014792899408284	0.00739644970414201	0.0133136094674556	0.00443786982248521	0.377218934911243

Loading ...

Empirical model for relative rates of amino acid substitutions (in PAML format)

0.407802449 0.167292843 0.697987563 1.080615109 0.154874930 6.078675532 0.498669739 2.651792497 0.352757876 0.000002246 0.172562554 6.629207687 0.615614879 0.371053201 0.037122417 1.007796988 0.098168736 0.407246786 5.718686041 0.120345256 2.431574162 1.686493158 1.018198530 0.876193076 1.386045828 1.224015665 0.006007632 0.616333606 0.000458402 4.432753602 2.157378668 0.699475462 2.277987560 4.596311404 0.602432288 0.064542717 0.202489051 0.315827813 0.000108486 0.079749333 0.000105210 0.000049801 0.128038590 0.000018642 0.402676448 0.221750527 0.548686773 0.033722949 0.001336021 0.472995523 0.991456707 0.000002869 0.283569947 1.548157582 2.491528766 0.666582934 6.873391880 2.193781284 0.040295645 0.000245142 3.163726158 1.424480290 0.258629376 0.000542364 0.048814625 0.003201752 0.650802197 0.486925571 0.002245936 0.000448768 0.586248861 0.085850032 0.050504420 0.268053304 0.000025968 4.352331606 6.032590099 0.624575937 0.654438025 0.000004043 0.000013985 0.000003946 0.685934354 0.000004319 0.112272979 0.002596170 1.207486983 0.000880447 4.497928735 0.000001079 0.016568624 1.668068282 0.734689443 0.010579608 0.705356085 0.000989208 2.871331402 0.008911377 0.200401537 0.995299544 0.934265020 0.809632894 0.267246575 0.097365337 0.000200684 3.229682944 1.033276955 7.917453872 0.448506252 6.338204509 0.978754801 0.845366549 2.319112439 0.027625506 0.002019133 0.650357314 0.340333490 0.003697564 0.612662311 2.423860304 5.188191479 0.413166969 1.894297772 0.054826441 0.138825509 0.416196732 0.706858756 0.167797182 0.110627049 2.628135253 0.002258036 0.730750459 5.398998911 0.258583974 1.123251682 4.446550794 0.411379299 6.021224845 0.021895457 0.083157398 2.820616192 0.720846231 0.000006407 0.564048757 0.545747091 0.000058474 1.672646653 0.000129405 0.000046252 2.706118487 0.055231489 0.000193580 0.000008807 0.525743493 0.000029909 0.260797183 0.127704903 2.034600707 0.187533848 0.000076747 0.000401964 11.700842065 0.517094860 0.016771468 0.021288246 0.000006321 7.746753780 0.028873956 0.380552461 0.022235154 2.845829698 2.349886961 0.063210582 0.102732420 0.051559111 1.723294504 0.070141204 0.361493816 0.277992216 0.000478623 10.744661778 2.118972565 0.157210143 5.508710380 0.874722122 0.120595331 0.002227654 0.535455906 0.490520763 0.000159631 0.091561000 0.063972200 0.032604800 0.048957400 0.019967800 0.040253800 0.062130800 0.080391100 0.024891200 0.033466200 0.090886500 0.074988800 0.026451200 0.028024900 0.048453700 0.071371500 0.057653300 0.008355630 0.019594500 0.076023500