Protein ATPIF1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	113.058224021001	0
Primates and Rodents clades	10.8962166534002	0.02776

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.173	0.305	0.523	0.184	0.314	0.502

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.412935323383085	0.104477611940299	0.0149253731343284	0.0298507462686567	0.0199004975124378	0.00995024875621891	0	0.407960199004975

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.156736637 0.000000060 0.437478379 0.016978238 0.069207546 6.569908362 2.474046006 3.326665529 0.000001060 0.000000002 0.697970458 2.801252993 4.420183701 0.366744948 0.000000015 0.608106431 0.088231568 0.509405630 4.319977559 0.000000015 2.070551936 0.727350614 0.820700445 2.076914082 0.909241630 2.349275970 0.003877503 0.110992746 0.000000001 0.924551973 12.360789233 2.752852832 2.003413791 2.086589150 0.203872709 0.070580329 0.059826470 0.000014752 0.906581549 0.000000002 0.000000228 0.000000002 0.034166076 0.000000001 0.226321667 0.081367782 0.184612084 0.000000005 0.000000011 1.133460454 0.181250234 0.263868631 0.000000001 0.441723126 2.312010626 0.012750067 2.878750781 5.296520528 0.030082861 0.000013506 2.570558823 0.363201492 0.006839105 0.297698090 0.000088253 0.000000002 0.943271746 1.433506898 0.000000008 0.000000002 0.000263039 0.000000002 0.000000001 0.027369976 0.483236482 3.141962786 5.906349004 0.612470209 0.000004636 0.000000053 0.000000005 0.000000002 8.951735899 0.724033979 0.000000004 0.181129865 0.343823502 2.431942499 5.449807770 0.000000001 2.874262219 0.009097562 6.196296280 0.000032554 5.647475158 0.000002628 3.363013658 0.000000004 4.642136175 0.000015895 0.000000003 2.773426712 0.000000006 0.000003838 0.000000009 3.367044464 0.507791336 13.026385729 1.026140324 0.000814756 0.201474637 0.348872078 4.586671855 0.090533657 0.000000003 1.036868040 0.039935001 0.042524010 2.012596690 39.095729568 6.494668366 0.000165919 1.063529862 0.000664502 0.000007554 0.000031092 0.262732455 0.000114326 0.132030298 3.060262395 0.000431606 1.937063967 5.873506100 0.000000520 1.632941391 23.253566314 0.000688798 3.443777040 0.000000072 0.000000002 30.654299877 0.000000002 0.000000001 0.689763581 0.022555331 0.097536200 3.558650949 0.000000001 0.000000879 0.000029791 0.000001476 0.241894741 0.000000402 0.000000001 0.869691402 10.325144048 0.000000004 9.257735175 1.634048482 0.361087427 0.000000001 7.192168224 0.605594341 1.666889047 0.000000001 0.000000004 7.130947083 0.000000083 0.024912878 0.000000526 0.000000106 5.545134464 0.081551259 0.000000011 0.000000002 7.848554288 0.000028747 0.153510978 0.483406704 0.000000002 4.565369032 4.306732533 0.176400288 10.747279286 2.540924407 0.000000939 0.009105364 9.490792627 0.073669278 0.000000814 0.119288000 0.089034800 0.018813200 0.055611400 0.006602630 0.050819300 0.102977000 0.094565300 0.041283100 0.034406200 0.064454200 0.115387000 0.026583100 0.023593500 0.008974970 0.065081200 0.022574300 0.012268900 0.010507300 0.037175000