Protein CMC4

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	1.50488858919971	0.8258
Primates and Rodents clades	0.517229325399967	0.9718

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.277	0.367	0.356	0.34	0.367	0.293

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.738095238095238	0.0714285714285714	0	0	0	0	0.0833333333333333	0.107142857142857

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.006052197 0.000000007 0.785367359 0.064824423 0.002618464 3.107279328 0.000000001 0.300316007 0.000000003 0.000000005 0.000000001 3.214872842 0.000000276 0.000000005 0.000000002 3.351733852 0.565567811 0.571094260 4.981499227 0.000000002 1.997456144 1.945949816 0.635421146 0.000000003 2.462001201 0.000000002 0.000000001 0.546463290 2.416492670 0.000000031 2.540790604 11.496568072 0.000000002 2.566051571 0.000000013 0.000000003 0.000004107 0.000000480 0.000000003 0.000000005 0.000000002 0.000000001 0.004645434 1.167544908 0.000000010 0.001279279 0.793256546 0.000000003 0.000000005 0.000000002 1.990653117 0.000000001 0.000000003 0.000000562 3.779451463 0.009678186 3.370512855 2.299099276 0.000000215 0.000000002 0.406494112 1.139731815 0.064474507 0.000000010 0.000000003 0.000000001 0.000000001 0.596004913 1.354388934 0.000000005 0.000000002 0.000000007 0.616851961 0.000000003 0.000000010 8.058571125 3.860136970 0.432283867 0.000000001 0.000000001 0.000000003 0.000000005 0.000000002 0.000000001 0.000000001 0.000000003 0.000000010 5.321171551 2.624591248 0.000000001 0.000000004 0.101803475 1.124515885 0.000060272 0.000002099 0.713588852 2.029737435 0.000173105 0.000000003 3.219419093 0.000000003 4.207498791 0.001015750 0.000009822 0.000000007 3.493697408 1.151512686 1.883783093 1.736670044 0.291914519 0.000063899 0.000000001 0.000000003 0.000000902 0.000000003 1.987562757 0.492132016 0.000000004 0.000000007 5.719847742 15.537820664 1.475287047 1.769034282 0.000008518 0.000000002 0.001905854 0.000004751 5.213379952 0.000018642 0.000000080 0.909405271 2.591287728 4.716348076 0.000000007 8.404422785 4.242942431 0.000000001 0.000000001 0.000000003 0.000000005 0.000000002 0.000000001 0.000000001 0.000000003 0.000000528 0.000000003 0.000000001 3.797867457 0.000000004 19.832915089 0.000000001 0.000000001 0.000000003 0.000000001 0.000000001 1.771467347 0.000000005 2.041332025 1.622707287 0.000000001 0.000000003 8.473975628 0.000000003 0.000000001 0.000000001 0.000000004 5.020827131 0.000000001 0.000000001 0.000000003 9.058670931 6.835144893 0.554109183 0.000000003 0.000000017 0.000000002 0.000000001 0.400522763 0.000000015 5.395849291 10.343560140 6.836911121 0.436697192 4.478205231 0.000000007 0.000000323 0.000000001 0.000114429 5.482605792 0.000000005 0.068440100 0.077435100 0.038757700 0.021809900 0.044936100 0.075554600 0.111714000 0.038239300 0.009582940 0.031042600 0.069693900 0.132893000 0.025006000 0.014106600 0.068988200 0.077133500 0.034859600 0.005196270 0.021354800 0.033256200