Protein COA3

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	46.4396994770004	1.995e-09
Primates and Rodents clades	6.04453189959986	0.1958

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.249	0.5	0.251	0.376	0.41	0.214

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.718518518518519	0.0666666666666667	0	0	0	0.00740740740740741	0.00740740740740741	0.2

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.000007230 1.539567449 1.468876040 0.374149734 0.000004253 3.939090539 0.000000003 13.869317623 0.000000212 12.148163668 0.129610361 3.551148225 0.000001387 0.000189267 0.000000035 1.330371259 0.000005536 0.000001090 6.433888772 6.195224607 2.176908787 1.883894985 0.645615320 1.815379199 2.513269198 5.806322362 0.011057938 0.217523300 0.000000078 8.160893659 0.000000321 8.376268166 0.000002055 34.616763913 0.162163130 2.082048612 0.000000001 0.000000001 0.000000006 0.000000003 0.000000035 0.000000002 0.000000001 0.337819677 0.000000011 0.124425822 1.112691143 0.000000006 0.000000003 0.000000035 1.573209761 0.000000001 0.000000036 0.289110636 2.656613662 0.000183531 2.520477872 4.656724136 0.000000003 0.000000035 2.876076489 1.762372944 0.388099795 0.000000488 0.000000003 0.000000001 0.177985374 0.000000029 0.000000006 0.657812961 0.000000035 0.000029980 0.077508076 0.000000001 0.000009033 7.236141125 5.798161067 0.001821261 0.396705633 0.000000001 0.000000006 0.000000003 0.000000035 0.000000002 0.000000001 0.000000001 0.000000011 5.105826679 4.275102111 0.000000001 0.000000004 0.925740454 1.926406453 0.000001791 1.261064818 0.000000035 1.484697580 0.000075979 0.178468166 8.652266786 0.000000003 0.302492917 0.539096511 1.638261510 0.000000003 3.582604497 0.201058051 3.486197450 0.284480604 8.669293725 0.367528311 0.377451401 2.659722384 0.181044331 0.000000003 0.000000139 0.846485798 0.000000004 0.769555276 8.999879088 1.756170123 0.297188733 0.000070435 0.000000003 0.000000035 0.430746927 0.000000009 0.341572034 0.000000011 0.740154045 0.286506638 1.407289609 3.191419617 0.000000003 0.367830253 5.750462855 0.000000001 5.208079660 0.000000006 0.000000003 0.000000035 0.000000002 1.473917187 0.000000001 0.000000011 0.000000003 0.010513578 0.751906318 0.000000582 0.000000003 0.000000002 0.000000002 0.000000002 0.142791723 0.000136587 0.000000006 0.811136383 23.988599820 0.000000002 0.000000001 0.000000001 25.986985246 0.000000003 1.426026999 0.000000001 0.000000004 4.918183038 0.000000002 0.000000002 0.000000002 0.000000015 4.524014610 0.011988764 0.000008789 0.000000003 0.000000035 0.000000094 0.000636135 0.403862600 0.000002192 3.482313106 8.283226122 0.446486667 4.011663044 1.142850756 0.000000002 0.000003686 0.803183781 0.000000015 0.002283546 0.128401000 0.091489000 0.018177800 0.039614300 0.002870130 0.058837100 0.078164500 0.068756800 0.009077390 0.034613200 0.080231300 0.091996700 0.024984900 0.031313800 0.061201600 0.051690100 0.053062700 0.006480420 0.022192500 0.046844200