Protein COA6

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
Primates and Rodents clades	23.2563738844001	0.0001125

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.125	0.125	0.75	0.202	0.239	0.559

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.348484848484849	0.0454545454545455	0.0353535353535354	0.106060606060606	0.0707070707070707	0.0909090909090909	0.0303030303030303	0.272727272727273

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.038756790 0.056160637 0.163166696 0.571995904 0.000151085 2.301995052 0.136191673 0.781311620 0.536324113 0.291752956 0.045779079 2.102744078 0.205271929 0.054603337 0.000264786 1.139017098 0.000875450 0.231211926 5.152300093 0.000026418 5.437475090 1.510280080 1.943650962 0.502165156 1.300358340 0.058485403 0.263993502 2.417008234 0.009520453 1.512724524 47.666250761 2.845122638 3.235596201 6.088293806 0.004804982 0.116971489 0.755297388 0.011411616 0.004152757 0.000239432 0.259038574 0.004767839 0.000312453 0.016499789 0.001908864 0.103757428 2.086887427 0.116620111 0.402006185 0.014459257 1.032190310 0.596457769 0.040672575 2.751464101 2.760734421 0.239394962 2.318815818 3.289215665 0.000182950 0.123102122 3.518450318 1.267305195 0.070565820 0.002154401 0.000156360 0.002162427 0.927396367 0.689799434 1.960336409 0.812198350 0.000631331 0.004285657 0.133371032 1.365906136 0.001609540 11.887193763 0.030365523 0.000069804 0.100462353 0.000016027 0.928098678 0.000004514 0.000121139 0.158462022 0.000006412 0.000025392 0.169104759 5.494623992 2.090860233 0.000000606 0.031855281 0.980816067 0.632605488 0.001990562 0.001235783 0.109569938 0.836203084 0.267185779 0.325086521 2.695566576 0.357755136 2.348311167 0.002009169 0.000337823 0.659156317 2.858571370 1.236725174 5.587096273 0.021148254 0.673312229 0.013001071 0.011946248 2.076852649 2.286490393 0.864751374 0.444148440 0.283175887 0.188278330 0.499868216 1.564306469 4.709829471 1.281158905 1.212867461 0.410811492 0.210961660 0.742783582 1.139001184 1.429468422 0.016805642 8.161209856 0.632629681 1.407364308 3.097955772 0.000329265 2.068860049 5.561696138 0.226711332 0.663574522 0.000062504 0.124631175 0.641615664 0.000040471 0.000181123 0.325776858 0.000113299 0.000349798 1.313984829 0.000004350 0.000131638 0.000051462 0.000073260 0.000254986 0.000122398 0.000001896 0.000006132 0.000115014 0.306881917 0.000033259 0.000008425 0.000001481 0.000005902 8.525431754 0.000028726 0.239610871 0.000000095 0.000007040 6.415292254 0.000015782 0.000010215 0.000002589 0.000031755 7.711644676 0.015772628 0.003680494 0.718306217 3.284722711 0.290101253 0.342233399 0.158235154 0.024387320 10.775943636 4.952454165 0.002072164 3.520701352 1.776278903 1.066042296 0.014272756 0.947023965 1.243564855 0.000094035 0.087703600 0.085453100 0.023162300 0.046017700 0.042645000 0.059465100 0.085415100 0.054611000 0.012038100 0.012788300 0.073497500 0.082324100 0.014474900 0.037561500 0.056889300 0.092716500 0.054792700 0.028227800 0.021055700 0.029160600