Protein Mar-01

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	52.5295170875997	1.069e-10
Primates and Rodents clades	12.0849182319998	0.01673

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.28	0.308	0.411	0.441	0.197	0.362

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.450777202072539	0.0414507772020725	0.0967184801381693	0	0.00172711571675302	0	0.00518134715025907	0.404145077720207

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.136047069 0.000033139 0.684195812 0.374698634 0.000168367 8.750214221 0.289351080 1.986853141 0.000000030 0.000000085 0.116770157 4.175795777 0.001514535 0.443537754 0.000000196 2.119789571 0.000449355 0.001520168 7.288711465 0.288488622 4.835873199 0.846231242 3.254317484 0.012364049 2.837874529 1.088699661 0.040768552 0.105813621 0.000007684 3.875480732 11.522319536 3.255351469 0.950350504 7.262935709 0.000000156 0.789884885 0.031120949 0.042597609 0.000704146 0.058897589 0.001050281 0.000001214 0.345888555 0.003968665 0.000001303 0.350309511 0.807316053 0.000002285 0.006958781 0.004296608 1.050787298 0.152195004 0.001608902 0.624196690 1.761917505 0.423903294 4.083713729 3.835758161 0.299427856 0.000000006 5.104239361 3.461039988 0.256081735 0.000061118 0.118739190 0.018188857 0.139819659 0.776256716 0.000000189 0.000006561 0.000001395 0.001972023 0.759768196 0.000002556 0.000000937 3.748977862 4.830753762 1.546696861 0.739144100 0.000000137 0.740986948 0.000001415 0.000002057 0.000001140 0.044488169 0.001655225 0.000008943 0.000276391 3.912901867 0.000000227 0.000894459 2.180503651 1.437203544 0.000028454 0.003913476 0.364800644 0.383663978 0.288858181 0.000791159 1.044311748 0.000001268 1.170681402 0.157120866 0.000000208 0.607635329 2.535694436 1.694713769 6.678813353 1.354213296 1.611408753 0.000195490 0.000538628 2.886182783 0.608317100 0.096610715 0.491563469 0.626642110 0.000178402 1.368598120 4.364734400 4.907625673 0.712155206 1.584601369 0.000001174 0.534303097 0.000218783 0.114158540 0.219795164 0.000139228 2.549644916 0.144725557 2.191353731 2.995020041 0.094906893 0.727410490 5.795464263 0.080876885 2.808226419 0.000001721 0.000000013 1.001273604 0.394297273 0.000000160 0.000001231 0.108953376 0.694275534 0.000000832 0.015977310 0.000000851 0.000001802 0.319350986 1.081367267 0.043241960 0.119925641 0.000000077 2.074521724 0.000000076 9.986737680 0.000000006 0.000000146 0.000000021 4.007009048 0.000007566 0.001402087 0.000000002 0.611485817 15.570411655 0.000000403 0.938296342 0.000001869 1.003176219 3.976168574 0.000879095 0.000000347 0.234923547 1.167915711 0.000000786 0.027652233 0.794039480 0.000000076 17.391207386 2.304366508 0.469034755 0.229673788 0.466189699 0.125374216 0.086490392 0.681627998 0.275429095 0.006334462 0.104358000 0.085130600 0.022173400 0.040881300 0.019001200 0.046570700 0.059412200 0.064266200 0.021971600 0.040356600 0.116363000 0.053916900 0.020682900 0.020777100 0.062624200 0.067825800 0.052867400 0.019646000 0.018989300 0.062185500