Protein HIGD1A

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	179.447394425999	0
Primates and Rodents clades	87.2110179151987	0

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.121	0.215	0.664	0.152	0.238	0.61

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.331730769230769	0.120192307692308	0.0192307692307692	0.00480769230769231	0.00480769230769231	0.00480769230769231	0.00480769230769231	0.509615384615385

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.159510520 0.000007548 0.000782894 0.338338375 0.000000317 15.443907346 1.377072659 5.502305011 0.000463826 0.000737304 0.030664789 4.682743517 0.766121853 0.005251464 0.000025626 0.490258321 0.080902235 0.826411886 12.136257270 0.634305443 4.459092204 1.638127304 1.294627321 0.162507122 2.256853958 0.604233811 0.514670590 1.249455729 0.000000023 2.420117083 4.833885269 1.951518419 0.000002742 8.047619830 0.010926546 0.000000190 0.372658660 0.001720229 0.344316401 0.000000322 1.583319407 0.001326238 0.000005671 0.096319473 0.540088269 0.056615078 0.276589435 0.000003359 0.000000036 0.907116945 1.637917242 0.000077726 0.097661962 0.051414213 4.357768029 0.000257096 5.232367302 3.469928426 0.000007872 0.000005064 1.858548666 2.084539675 0.000342084 0.047999319 0.136433773 0.004446983 0.128446500 0.398452532 0.000003660 0.000000592 0.002808876 0.646508646 0.000000238 0.001143565 0.000001100 3.401659715 3.406104173 0.175697533 0.000215516 0.000000004 0.001232614 0.235552897 22.795643183 0.000131233 0.000000171 0.081460913 0.000315491 1.013078901 4.099441331 0.224103154 0.000388070 0.690275144 0.526776478 0.002361073 0.065394642 1.816155147 2.465045368 0.828804040 0.108500150 0.000001704 0.000259060 1.169266403 0.317610070 0.000000006 0.004856422 1.004947487 0.003233168 6.190533419 0.963231791 5.028347049 0.576224056 0.657619418 1.379852480 0.874154190 0.101003825 0.050442220 0.228411220 0.219718739 0.694510315 3.509281948 5.510692438 0.210223855 1.406455863 0.750967171 0.256134092 0.016186195 0.000816356 0.110525169 0.000003091 3.778877531 0.193819993 1.072851889 3.088899677 0.066001424 1.009749509 5.136416961 0.000010711 1.772975552 1.253649895 0.000576387 22.276108332 1.162861354 1.605807827 0.763204020 0.000000035 0.000000647 0.876709450 0.000000425 0.000000004 0.591890979 0.000000005 2.050055085 0.000000668 0.000000054 0.000000002 1.161289748 1.110846451 11.080768912 0.000012020 0.095550772 0.000000001 6.606427262 0.031956000 0.229252997 0.007930573 0.253352082 3.301775791 0.000000002 0.045726554 0.004473527 0.025790943 2.994358537 0.053901988 0.125095698 0.142401621 2.392781990 0.248250214 0.511180237 0.666570366 0.000000043 8.254835433 1.970848114 0.000016380 1.883098888 0.366435566 0.000017087 0.005331842 0.477271313 0.434616550 0.020545916 0.090348900 0.058676500 0.022466400 0.038204200 0.008796330 0.036501600 0.052914800 0.077535100 0.016744300 0.046273000 0.070417400 0.083587400 0.053765100 0.033145800 0.046197200 0.089589300 0.046599700 0.010564600 0.042088900 0.075583400