Protein HSPD1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	1168.2201784358	0
Primates and Rodents clades	489.507653803397	0

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.102	0.598	0.3	0.16	0.546	0.293

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.588169642857143	0.0524553571428571	0.00334821428571429	0.00334821428571429	0.00223214285714286	0	0.00446428571428571	0.345982142857143

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.085243619 0.220261662 0.163500338 0.558899217 0.038738171 6.496398873 2.176683476 9.121274935 0.651468851 0.043452786 0.477293797 6.206366940 1.120152111 0.159575104 0.001001537 0.334592193 0.198589043 0.478515359 3.393781363 0.157924737 1.779897640 0.969589973 2.750125714 0.125098832 1.546884955 1.431934939 0.128482580 1.152541809 0.332311756 12.959050170 6.194960694 1.741470582 20.636810863 7.177724293 0.072078469 0.610426735 0.018354789 0.378250650 1.195514495 0.002028287 0.305941511 0.011145918 0.049327850 0.059878362 0.153570441 0.181278998 0.654669400 0.317637570 0.047297467 0.950121323 0.645743836 0.138259010 0.036923965 2.449795455 1.961353700 0.202743664 4.481386337 3.791549280 0.018268453 0.178358475 2.261871664 2.331462951 0.012552353 0.130874667 0.312809876 0.156167679 0.092255123 1.237509926 0.135216068 0.050968731 1.223422344 0.400355844 0.157983578 0.860824998 1.072653554 3.064238293 2.623042466 0.596550169 0.165024059 0.028565903 0.234878959 0.000196595 6.529792268 0.353443434 0.214975216 0.243621081 2.348920497 2.619821265 6.413012642 0.043965322 0.761959605 1.733804120 1.827804564 0.013651225 0.008237027 0.028742353 1.730076346 0.115324682 0.238512367 4.415212043 0.207272783 2.540294992 0.417387329 0.352695740 0.222529244 2.265675118 1.822147995 5.938763802 0.488043424 4.713634796 0.862058686 0.508121395 1.915442263 0.931954170 0.611889983 0.714272092 0.298391283 0.398300711 3.226678030 4.690426044 3.742436603 0.768760993 2.664850957 0.192350368 0.623329158 0.607457661 0.140015895 0.021037880 0.416212931 4.385383494 0.318806634 0.956342225 2.833182201 0.180780713 1.580992498 3.292236852 0.985626527 18.663629806 0.325819626 1.220417272 13.575737772 4.828557891 1.201238332 1.114929015 5.727809402 0.000014318 1.475353363 0.000836030 0.777299274 5.693715516 0.495764333 0.604555110 1.023122655 0.030434175 0.653088018 1.585717045 1.865161461 12.390279618 0.640977284 0.301962453 0.119618288 10.802311869 0.124421655 0.623084185 0.069402298 1.732936405 8.477100435 0.193788423 1.699738835 0.668983731 1.793624913 2.517006160 0.131283377 0.024655394 0.414265568 1.702870006 0.105587441 0.246985963 0.606107315 0.593649638 5.632829307 1.457414016 0.051728010 2.852437698 1.920014753 0.176003579 0.211463143 0.176340238 0.500850569 0.645929503 0.095244900 0.043948900 0.035211200 0.055877200 0.016526100 0.031867900 0.069076800 0.096795400 0.013737800 0.064844500 0.083893800 0.079174900 0.034296700 0.020063700 0.036322500 0.053337900 0.058349700 0.005378750 0.013314100 0.092737200