Protein MGARP

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	90.9472142382001	0
Primates and Rodents clades	33.9426369463999	7.656e-07

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.096	0.196	0.708	0.128	0.46	0.412

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.4364896073903	0.1270207852194	0.023094688221709	0.0207852193995381	0.0415704387990762	0.0438799076212471	0.0161662817551963	0.290993071593533

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.250447884 0.000667150 0.000017087 0.812877098 0.000012670 9.460049607 0.232137145 3.027605229 0.000001713 0.014651807 0.073623228 2.812046821 1.488121939 0.766799864 1.080157307 0.663263891 0.263248676 0.025674885 4.150115499 0.000000012 2.287013036 0.775776504 1.361179239 0.008642980 4.000941506 5.481978634 0.053895333 1.677207358 0.000000420 9.224562771 9.672510653 3.190786377 11.860483193 8.176119403 0.000567055 0.351429401 0.185777534 0.847651684 2.356634373 0.402531119 0.000049649 0.000000019 0.001287905 0.461720946 0.401780008 0.000608312 1.075450218 0.000000244 0.000956612 0.000000012 1.661938409 0.011378104 0.161235864 0.803539397 3.349484463 0.035583622 5.974243779 4.329609294 0.054695598 0.000000012 4.832609106 2.068049330 0.183617656 0.000000007 0.481131878 0.297501800 0.512739129 0.107408256 0.817273325 0.000000016 2.728856048 0.000000004 0.046039748 0.000109858 1.376035188 10.331024832 2.951450767 0.000000003 0.058695061 0.000000004 0.889228551 0.800595557 0.050437842 0.000000004 0.000000003 0.416175565 0.000000010 0.000000992 10.001854829 1.111258587 0.000000008 1.594934276 0.073632536 0.000008260 0.001242344 2.326247698 4.178915549 0.057187973 0.001603252 1.428851242 0.013460029 2.178623644 0.000257362 0.000000008 0.316781631 0.954257473 1.570579381 3.818973522 0.535031694 5.852268035 0.225324391 0.151157643 1.463972864 0.009583519 0.672649497 1.022056096 0.000313280 0.000000032 2.157182774 2.487615266 4.311569482 1.098513153 2.010544614 0.183974689 0.000054600 0.010974797 0.573228476 0.141961434 0.000000050 4.975804728 0.000076903 1.797605301 2.273329467 0.314713404 1.999204264 1.516690333 0.000000001 15.707436526 0.000000004 0.000000023 10.691146964 0.000000004 0.515725108 3.509931805 0.000000007 0.000000004 1.241602354 0.000000003 5.431507372 9.405583080 0.000000001 0.235584347 0.000000001 0.000000001 0.069261390 1.180233618 0.000029190 9.478087243 0.000000004 0.000000001 0.004763697 4.216088794 0.000000004 0.000000002 0.000000003 0.000000008 5.183424435 0.000000001 0.248923996 0.131455399 0.000000029 3.461118166 0.245089050 0.101458523 0.318588179 0.450651966 0.000637922 0.454885611 1.450574664 0.000019605 6.460409832 2.189370740 0.151291630 2.787661406 2.621267328 0.210610143 0.203133981 0.182493307 0.000000029 0.000000007 0.145685000 0.026176200 0.023585500 0.045671500 0.008233560 0.026465000 0.145468000 0.070606500 0.014550500 0.023868300 0.054991600 0.039403700 0.013103600 0.007934330 0.079674700 0.099860200 0.077319000 0.003436560 0.013427800 0.080538700