Protein MRPL40

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	76.6072149069987	8.882e-16
Primates and Rodents clades	9.93549882279967	0.04153

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.195	0.355	0.45	0.234	0.379	0.387

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.457413249211356	0.107255520504732	0.00946372239747634	0.00630914826498423	0	0.00630914826498423	0.00315457413249211	0.410094637223975

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.468535659 0.000390955 0.185627662 0.286091111 0.153531316 8.281266158 0.001798229 2.189526621 2.482213398 0.000000007 0.163242588 2.800277568 0.252527352 0.000098999 0.000000338 0.913362435 0.000049180 0.861647122 4.281756726 0.000000009 3.109666077 2.328861365 3.162988365 0.789797522 4.265008386 0.178734474 0.349049208 0.888600200 0.345425548 2.665820659 16.224793696 0.898275749 3.560307256 5.503378596 0.000000023 0.000004651 0.000043702 0.286836922 1.051529441 0.000000041 0.000149000 0.373082888 0.102372950 0.007316744 0.603650627 0.152170606 0.486225285 1.202746582 0.000009866 0.024642533 0.469989717 0.114879079 0.707296069 0.647078357 1.951364996 0.008927903 4.669266720 1.727378958 0.155915109 0.000000024 0.948985064 1.192132491 0.242271705 0.068691565 0.186695682 0.000005649 2.069093868 0.639910183 0.000044415 0.000000303 1.835103872 0.564541200 0.046261949 1.121415828 0.000001270 1.808061381 4.549031988 0.890442072 0.000006166 0.000000001 0.000000094 0.000000002 3.625717295 0.000000035 0.190833393 0.341293881 0.572213517 0.247280100 4.198610910 0.000000001 0.000000498 1.118365799 0.384606848 0.000214605 0.065753785 0.588415232 1.455861041 0.003601499 0.000469086 1.220002698 0.000000007 1.149224823 0.000000014 0.155574395 0.908757943 4.198721790 0.509598860 10.090587578 0.004390816 12.303606450 0.176520199 0.250367729 4.571970509 0.000109269 0.066180937 0.313642608 0.087512701 0.000767649 1.037435631 2.202303355 5.853423003 0.414018315 4.402830345 0.013722830 0.004491002 0.066921999 0.272563457 0.614317431 0.000024227 4.383908990 0.000665698 0.316588785 5.026254610 0.000009192 0.659197637 4.200046311 0.000324596 1.482702994 0.000047393 0.000000002 9.745405680 1.888636988 0.000000001 5.940632915 0.000000039 0.000000025 0.585834350 0.171645446 0.000000177 0.000008363 0.630722199 0.002830411 0.007453502 0.000000001 0.000000001 0.000000006 0.245574957 4.777193651 0.000000002 0.000000001 0.000000004 10.822273185 0.000000002 0.000000001 0.000000001 0.000000004 6.598119372 0.332076046 1.241046619 0.000000011 1.941194694 5.768931153 0.000223783 0.003563866 0.021362409 5.893041331 0.048040889 0.630999426 0.523137466 0.000045088 11.300516877 2.980068089 0.000051300 8.540965208 0.215201238 0.368700408 0.407528558 1.297571404 0.000000147 0.000000005 0.086777600 0.089203300 0.019340400 0.041078700 0.011013600 0.058929800 0.095450800 0.027520300 0.019273400 0.044091700 0.117199000 0.087397600 0.024948000 0.026565600 0.061136900 0.064780000 0.046776000 0.013879700 0.018854600 0.045783300