Protein MT-CO1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	224.301287560602	0
Primates and Rodents clades	0.60014440319992	0.963

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.606	0.287	0.107	0.599	0.275	0.126

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.877005347593583	0.0392156862745098	0	0	0.0035650623885918	0.0071301247771836	0.0106951871657754	0.0623885918003565

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.443015951 0.148862855 1.096871121 0.000000883 0.000000563 13.849949369 1.149662870 0.000002116 0.000001900 0.000000005 0.063556719 3.022954605 0.006147749 0.000033748 0.000002004 0.000074017 0.000000008 2.741639817 7.526625637 0.000000240 5.731775559 2.646858897 0.000000008 1.186348154 0.578921309 0.000000257 0.000000005 1.024032227 0.110014955 0.027238410 3.468256160 0.000388502 4.525966622 13.228964558 0.674137043 0.000012801 0.571662749 0.039892857 0.000013009 0.113989414 0.616756252 0.000003270 0.000488390 0.000000002 0.000006297 0.123188529 0.212615939 0.000000017 0.000000005 0.919262889 1.527851140 0.160142745 0.004707103 0.372411266 2.301830010 0.001971043 4.651094752 4.115990058 0.741457763 0.000008561 10.661095218 3.512147134 0.000000002 0.000035620 0.001131922 0.456689611 0.495908422 0.000000134 0.264957194 0.000000011 0.000009386 0.427513820 0.053873315 0.045141826 0.201913604 2.673248255 4.549441887 0.159257597 0.156966271 0.000000008 0.000000018 0.000000005 3.337383396 0.016110097 0.000092837 0.028820380 0.179111818 0.267655182 1.794209141 0.150705754 1.052064385 2.296447255 0.000000014 0.001156080 1.226497398 0.000000057 1.394795333 0.003153538 0.146097003 0.000000018 0.000004587 0.064362569 0.000600046 0.086696243 0.000000001 7.120457106 0.000014645 4.320537605 0.000025796 7.825820908 2.167948832 1.669917746 1.465830334 0.627582072 0.001503413 0.300128795 0.466813361 0.000876232 0.051435402 1.797002610 5.018457854 0.773216728 1.991509405 0.061793263 3.844631686 0.432202308 0.056693137 0.237835304 0.834053760 0.800647872 0.210428191 0.712458512 2.697889787 0.433696542 1.618389568 5.983564302 0.000000309 0.000000008 0.000000003 0.000000005 0.000000259 0.000000005 0.000000004 0.000000002 0.000000004 0.000005982 0.235094239 0.000000004 0.000443845 0.368993457 0.000000003 0.000000457 0.187734521 0.000005597 0.000000008 1.488658750 0.001683186 3.720906686 1.432010376 1.593019951 0.000000002 1.604213612 0.461068139 0.623264783 0.668170411 0.000582574 5.671889757 0.000000003 0.042586706 0.000025126 4.958746717 1.881982154 0.034394664 0.002652217 0.000002482 1.813747760 0.000051341 0.000001878 0.000054849 0.127157262 10.790235941 0.620839492 0.494686605 2.582138274 0.010015545 0.335172073 0.058392213 2.409788446 0.000001176 0.054520341 0.076498600 0.012646700 0.032589000 0.020196700 0.004543140 0.019121300 0.022515600 0.061004400 0.025517300 0.096562300 0.142086000 0.027176600 0.056733600 0.072951700 0.036818700 0.072549400 0.069849700 0.021549800 0.042208100 0.086881700