Protein NDUFA12

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	111.215086134	0
Primates and Rodents clades	18.3595423239999	0.00105

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.284	0.391	0.325	0.449	0.258	0.292

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.486590038314176	0.0689655172413793	0	0.00766283524904215	0.0114942528735632	0	0.00383141762452107	0.421455938697318

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.110309938 0.000170280 0.000000205 0.016558814 0.000000169 3.087275607 0.765923637 8.434820265 0.000000009 0.000000002 1.626329242 0.865967799 0.065756531 0.000045355 3.988290592 4.092931246 0.159429467 0.003223235 8.998484209 0.000000035 5.664404298 4.494910038 1.129675855 0.000000002 0.314668345 2.022642330 0.649810095 1.481628357 0.000002036 3.235598116 1.261375811 0.000051599 0.000000098 3.879884252 0.604123133 0.363149134 0.000111665 0.000000187 0.000001832 0.402472592 0.000095385 0.084777984 0.000015912 0.089156890 0.000006531 1.125528822 0.366240837 0.000000111 0.000008444 2.783788354 0.530278359 0.000073794 0.000016705 0.899565398 5.495976941 0.003297789 5.258214620 2.118283031 0.364885892 0.000002216 3.039434969 2.221546452 0.078104337 0.412060983 0.000379773 0.045196069 0.591974575 0.000000370 0.101224713 0.000001116 0.000050394 0.988557025 0.591513125 0.000000008 0.710485316 10.781197871 2.896723681 0.002371737 0.892802708 0.522075195 0.000009370 0.000000002 0.011599820 0.000000002 0.000000028 0.333959578 0.000000008 1.239694386 6.099713914 0.000013073 0.604911697 4.591019378 0.207629802 0.339245862 0.364182690 0.000000039 1.052520476 0.000002178 0.150054815 0.151871815 0.000000004 1.425880427 0.154196907 0.000000003 0.000000002 7.452394921 1.313131272 3.065402711 0.269645564 34.943937715 0.000215975 0.143433034 2.282312971 0.000000071 0.663776236 0.000026450 1.839103959 1.227963701 0.000089129 3.166025907 6.279566152 0.088325837 0.777106087 0.000000040 0.000002128 0.008372940 0.659068377 0.062810278 0.235895633 2.509682694 0.005602071 1.576991973 1.096758426 0.097427784 0.546243609 6.108689866 0.503804574 0.956578164 0.203128269 0.000000002 0.000000250 0.000000002 0.000000002 0.147860875 0.000000003 0.001018596 0.985622829 0.227292309 0.501522571 0.549970334 0.000000002 0.862300001 0.000000001 0.019502266 0.000007832 0.877651533 0.176563731 10.991693326 0.000000002 0.000000002 0.173718243 2.913164833 0.209637309 0.616724167 0.100823245 0.952170309 5.846900194 0.000000002 0.679331826 0.000000348 0.000078653 5.170033933 0.072803409 0.000000113 0.219745686 0.876159121 0.000907031 0.525826304 0.087130147 0.000037683 14.133035975 4.463665298 0.259889893 3.946784384 0.370150191 0.000021592 0.002526046 1.713391126 0.000381272 0.206699789 0.033919700 0.073433100 0.047227400 0.044795100 0.005795340 0.049314100 0.052450400 0.067226100 0.031707200 0.033270700 0.065854400 0.082174800 0.032937700 0.042978500 0.061983700 0.037193900 0.075246100 0.027311200 0.053539000 0.081641500