Protein NDUFA4

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	105.677120140001	0
Primates and Rodents clades	13.0262339226001	0.01115

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.163	0.438	0.4	0.356	0.312	0.332

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.352941176470588	0.0695187165775401	0	0.0106951871657754	0.0053475935828877	0	0.0106951871657754	0.550802139037433

Loading ...

Empirical model for relative rates of amino acid substitutions (in PAML format)

0.044893600 0.054163934 0.310415322 0.146165162 0.000000002 1.772670360 1.412715913 15.726461189 0.000000315 0.000000002 0.000215359 2.444377820 0.000088298 0.457370415 0.000000009 0.852934187 0.067052725 0.940839515 6.492275422 0.000000009 4.297300989 3.000908473 2.440684521 0.451846026 0.605255121 5.655144368 0.380295501 1.678237147 0.000000002 4.338258457 6.590603187 2.215513375 21.080183088 14.635211470 1.982425501 0.000000001 0.000018845 0.000000004 0.393863274 0.000005829 0.022675365 0.009478023 0.000000004 0.000008148 0.569210542 0.004099770 0.481330370 0.000000002 0.102033711 0.000000009 1.280344179 0.000000004 0.177945095 0.435409663 2.223701480 0.000003308 4.718451074 2.014449714 0.000000536 0.354585414 2.664631990 2.728654917 0.000032451 0.000000006 0.289265402 0.009453079 0.992300542 0.000027095 0.000000002 0.000000002 1.828757582 0.000000004 0.000000004 1.128982136 0.000000006 6.176711317 5.406910566 0.383556830 0.000000002 0.319138027 0.000000002 0.000000002 4.272529051 0.000000004 0.000000004 0.284105297 0.349058272 2.609076085 3.024082796 0.000000001 0.401207450 0.705504383 0.226616525 0.000005366 0.000000002 0.000000009 0.803928573 0.000000004 0.003823555 0.792726208 0.243359562 0.992104425 0.110864952 0.075550297 0.000000002 4.053112572 1.940348865 4.785993207 0.940285250 12.160798802 1.140018000 0.000009007 3.647688338 0.031145593 0.531618092 0.516803713 0.671003143 0.147541749 1.112640673 1.397956049 6.807545138 0.000056968 5.152400851 0.234011179 0.000000054 0.671898693 0.268159301 0.858443664 1.659748170 4.624264994 1.076699873 2.196344726 4.404814721 0.022877686 1.515863494 7.309685063 0.000000002 0.899537903 0.000000002 0.000000002 2.260752944 0.000000004 0.839352571 0.000000001 0.000000006 0.475834019 0.565737337 0.000000001 0.000000003 0.400858247 0.000000001 0.000000002 0.000000003 0.000000002 0.671359330 0.786597724 0.861737642 6.105154318 1.853391187 0.000000004 0.094598508 4.690026354 0.433264883 0.000006040 0.023522399 0.000003692 2.742260619 0.000000001 0.815834668 0.000000003 0.524635682 2.342927449 0.985152935 0.000046147 0.029614460 3.141417113 0.000000553 0.607193407 0.203555969 0.000000006 11.907447296 2.859971931 0.000000001 4.068648346 0.545168808 0.002698594 0.094408863 2.911457046 0.000000006 0.197443948 0.066485200 0.046029300 0.051115200 0.057304100 0.011557300 0.028554900 0.026282400 0.070923000 0.017075000 0.047771700 0.116141000 0.089919400 0.034485900 0.052782000 0.071929300 0.061955200 0.036814900 0.017690600 0.038250400 0.056932900