Protein NDUFAF2

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	116.758464096001	0
Primates and Rodents clades	30.3529226160008	4.148e-06

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.122	0.293	0.585	0.21	0.294	0.496

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.65	0.122727272727273	0	0.00454545454545455	0	0	0.00454545454545455	0.218181818181818

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.267474863 0.040310698 0.187469260 0.502003614 0.289143304 4.366376531 7.262826354 3.646274535 0.001413035 0.000001285 0.184252756 3.736717514 0.008284601 0.260668574 0.000029288 0.509280141 0.001044816 0.458362884 3.883818939 0.000451677 4.153819949 1.407835268 1.910466404 0.692461853 2.541815817 3.509737980 0.320212710 0.557636580 0.242138191 1.828834184 3.560552332 2.417869407 9.460499895 10.333421931 0.005454444 0.000000002 0.391513327 0.762626102 0.304158607 0.116595734 0.000619621 0.000000058 0.000000001 0.069379571 0.000000005 0.271465216 0.307042592 0.132200999 0.000050143 0.001305071 1.250634537 0.025261821 0.000000002 3.023425895 1.333728142 0.001843694 4.589432750 3.223081883 0.000000788 3.949918080 2.461085488 1.155193301 0.006639762 0.000001915 0.177533105 0.065893325 1.052098579 0.000602468 0.000000003 0.000000003 7.301113616 0.000000087 0.000000001 0.000000002 0.000000005 8.549694986 4.151594506 0.777712841 0.252013587 0.243100892 0.000001023 0.000000003 0.005626625 0.000000002 0.000000001 0.000038006 0.000000005 2.929134136 7.925054221 0.125619897 0.176661756 2.408050050 0.689181873 0.000000003 0.000000003 0.000976320 0.901107725 0.067166823 0.000145671 2.622719800 0.000000002 0.238401478 0.000002507 0.000000004 0.683861210 4.191635140 1.375842595 6.654577692 1.249880333 10.322197174 0.041509000 0.019539159 2.475606705 0.009678989 0.069741932 0.842347176 0.357936277 1.679719639 0.786340638 1.471337056 4.411265652 0.000000004 0.307057275 0.634019251 6.397070599 0.108539854 0.001004468 0.001774318 0.000000013 2.731383958 0.001550298 0.901930865 1.242746100 0.759742154 0.075201277 4.288505160 0.000000002 1.496613696 0.154501397 0.000000003 11.543232689 0.000000002 0.000000001 0.216745893 0.000000005 0.181322681 1.248559724 0.000000006 0.428542325 1.434287052 0.182845788 0.787519447 0.000000002 0.000012100 0.226204756 0.476740812 0.401521852 39.546300060 0.151050636 0.048865780 0.000000002 8.600140625 0.305638650 0.000000049 0.000002205 0.000000004 4.839620433 0.000000441 0.837262330 0.000000136 0.454930828 7.363252544 0.000438832 0.000000007 0.000000011 9.714235559 0.173468876 0.728461635 0.317955858 0.000000005 9.100756466 4.218362921 0.000000004 4.373104740 0.384554441 0.000030483 0.515991117 1.123133494 0.000000004 0.000042184 0.065182200 0.056521800 0.037224000 0.038440000 0.003247080 0.053424800 0.103181000 0.055158600 0.020195600 0.051079600 0.062245000 0.106429000 0.025524200 0.027768500 0.053495900 0.067362400 0.061270900 0.023094500 0.041121700 0.048033400