Protein NDUFB4

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	78.2945946464006	4.441e-16
Primates and Rodents clades	13.8957404292005	0.007635

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.155	0.385	0.46	0.256	0.399	0.345

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.529953917050691	0.0552995391705069	0	0.00460829493087558	0.00460829493087558	0	0	0.405529953917051

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.241276361 0.285118899 0.000081839 0.131027981 0.000000001 8.206674864 0.000013962 13.333863649 0.000000521 4.136865903 0.030406569 7.383137887 0.000000570 0.233913722 0.000002643 1.174119227 0.009554535 0.000000003 3.371327299 0.463271269 2.968694736 2.443600946 0.981141892 1.196466916 0.997496035 3.334145526 0.000000019 1.515567877 0.003466475 6.310763730 8.935176951 1.541984683 21.418132028 9.962424462 0.000000016 0.000000003 0.206148562 0.029048452 0.338947705 0.000000002 0.000038740 0.280714956 0.000000001 0.000000003 0.300307156 0.047126616 0.774783045 0.000000003 0.000000002 0.000016534 1.509057977 0.003976532 0.273965804 1.652922054 3.769956788 0.019780824 4.165488684 3.176579461 0.000000517 0.000000631 3.548895951 2.427221945 0.170034637 0.000000065 0.039757666 0.000000005 1.484255405 0.412075940 0.000000003 0.000000002 0.000000022 0.263204294 0.000000001 0.000000003 0.000000008 1.484977667 8.849867003 1.668688406 0.373924775 0.000000001 0.461275530 0.000000002 9.827951657 0.502247617 0.000000001 0.981708515 0.000000008 2.188459679 3.021540939 0.409979441 0.609803819 1.047155833 0.715462186 0.039982162 0.000000002 1.279473440 0.000005971 0.196705561 0.000000003 0.550114471 0.045341387 0.866927335 0.141590272 0.000000007 0.000000239 3.183390069 0.566562359 7.932246032 0.361486694 0.000210346 1.333872322 0.581683993 0.566717650 1.886213836 0.140150351 0.630283049 0.126091849 0.000005105 1.133000387 3.117537451 3.650283514 0.045414469 1.391629482 0.172507207 0.000001532 0.361070952 0.125865966 0.159829553 1.882425309 3.579629084 0.298908014 1.802986516 5.747647396 0.256318872 0.947371133 7.454838785 0.000000001 1.328312531 0.000000003 0.000000002 30.237081280 0.000000003 0.000000001 1.250840629 0.000000008 0.000000002 3.958432753 0.000000001 0.000000007 0.365196423 0.000000001 1.293492653 0.000000002 0.165975323 0.000000001 0.493513055 0.195144542 25.449742865 0.004277815 0.000000001 0.000000003 9.981016629 0.260871066 0.458107003 0.000000001 0.000000007 3.121994283 0.000000001 0.858198726 0.020049545 1.983569748 5.010354813 0.001556248 0.312115752 0.742770704 7.161579679 0.469980735 1.054888258 1.534440483 0.000001060 15.839048252 6.963945590 0.925603412 3.713299010 2.303995929 0.292968178 0.212986668 0.662442393 0.656616634 0.000006157 0.081459700 0.093026300 0.038793300 0.045647600 0.004637650 0.030365500 0.069942100 0.033605800 0.012273900 0.055031400 0.096393200 0.068340500 0.013421300 0.051880300 0.085384700 0.055661700 0.060712600 0.009891510 0.058743700 0.034787300