Protein NNT

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	420.020740243599	0
Primates and Rodents clades	49.0984110336012	5.569e-10

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.55	0.306	0.144	0.557	0.268	0.175

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.852106620808255	0.0799656061908856	0.000859845227858985	0	0	0.000859845227858985	0.000859845227858985	0.0653482373172829

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.233177470 0.129252213 0.728267463 0.245958293 0.178060635 6.342153729 0.745727185 4.398791517 0.684356455 2.133728923 0.773688595 3.751356999 1.267027130 0.579645037 1.427829159 0.780260848 0.268123134 0.358948124 10.875394722 0.000000160 3.652967771 1.518452829 1.104399926 0.777297737 0.377443404 1.886739157 0.219481699 0.237588142 0.232397255 4.912161924 7.863218056 2.629053655 0.000466117 9.234076744 1.866660910 0.223368954 0.032122792 0.552818293 0.289585861 0.123712400 1.212776209 0.162102665 0.137788651 0.140653996 0.185771313 0.480717690 1.024682323 0.181098740 0.120964629 0.103197831 1.190799605 0.000047144 0.165059266 0.980241662 2.867197785 0.402479487 14.453854192 3.002239445 0.214424327 0.000748854 5.685415435 1.529442126 0.237694059 1.585571382 0.167802005 0.238280267 0.453162958 0.986236288 0.265898185 0.000000007 2.173580343 0.484729569 0.000000373 0.000000024 0.477148761 3.141797586 4.726286297 0.051376244 0.374614820 0.017171375 0.357636737 0.000077009 1.271867590 0.749923582 0.119574807 0.291401932 1.074357099 0.829039426 5.066430773 0.197802754 0.795445855 0.935191157 0.279370086 0.287042924 0.291129138 0.180801678 3.101450625 0.530764139 0.015899990 1.775117242 0.000012553 0.514573307 0.243760717 0.335164200 0.427454677 3.860430327 1.950549257 5.972486821 0.964052628 5.819504407 0.282550865 0.217051854 2.134252778 1.181508343 0.076347931 0.673431515 0.505295126 0.246642044 0.730752626 2.040190020 2.554122326 1.184458002 1.488942561 0.304659785 1.587380613 0.263450526 0.442390752 0.302770605 0.811735580 1.553829906 0.141898787 1.197286411 0.966333000 0.452142332 0.979668767 5.872968569 0.654639184 5.538475386 3.346370341 0.000000055 0.000004636 4.848343702 0.000032150 0.000000097 6.566470537 0.000000024 0.000792622 0.000000607 5.282499859 15.110189796 3.153603309 0.007578127 0.753451217 0.124882654 0.289387423 0.000000034 0.281984139 3.691175498 0.029215999 0.188658320 0.117508684 10.451590395 0.197741292 0.049646763 0.012037860 0.878460294 10.015225867 0.000000004 0.444109670 0.085307122 7.068062077 2.152280626 0.449443699 0.100733512 0.096146875 1.610998271 0.442186040 0.328889528 0.390272703 0.000053980 10.106902921 1.825563117 0.027849347 1.793225695 1.106913928 0.025684097 0.024308411 1.724486596 0.000000145 0.005986797 0.111636000 0.025552700 0.034696100 0.037463100 0.010585300 0.034350700 0.052117500 0.079859800 0.014905100 0.061831800 0.099366600 0.057326300 0.033736300 0.030343100 0.049952700 0.073150400 0.069526200 0.002093530 0.033310800 0.088196300