Protein PDP1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	141.866185806	0

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.416	0.364	0.22	0.407	0.398	0.195

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.586720867208672	0.121951219512195	0.0474254742547425	0.0230352303523035	0.00677506775067751	0.0176151761517615	0.0040650406504065	0.192411924119241

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.295255679 0.065630827 1.128043264 0.122915124 0.000001218 5.146187655 0.292059474 2.401612138 0.996918594 0.000000013 0.471120699 3.436699858 1.049522793 0.219681835 0.015978657 0.981060035 0.048518704 0.882657069 6.247657811 0.000000006 1.888231190 2.342663182 1.268993887 1.108648109 1.563657910 0.000027415 0.032376408 0.867471246 0.147103777 1.290569374 1.637959955 0.644032743 2.599800019 5.086041212 0.000585853 0.679027661 0.000887817 0.171965707 1.122513111 0.000032413 0.502160509 0.000001009 0.000132773 0.462868122 0.000000004 0.141417411 0.474358284 0.000000003 0.000000047 1.323992953 0.709981423 0.033582699 0.034689258 0.596679370 3.037801763 0.275837723 10.440916023 0.146470847 0.000000002 0.000543548 3.750069151 1.929110643 0.497602292 0.002045394 0.125660491 0.000000151 1.569964652 0.860437251 0.000000003 0.000000002 0.000000162 0.251158607 0.000001349 0.000000002 0.528246958 6.451083406 6.033760459 0.798167721 0.000000084 0.000051741 0.000000003 0.000000002 0.650688030 0.000000002 0.000000002 0.000000002 0.542794640 1.399866633 4.897883757 0.000000003 0.001171594 1.671897694 0.015074392 0.330429751 0.015033732 0.000000006 1.146606445 0.454623360 0.086390653 1.536424786 0.294754945 0.528363851 1.142582406 0.000000006 0.767923339 3.150111090 1.051694796 5.475879568 0.239893945 4.884011047 0.553809887 0.347012798 2.302361127 0.223590903 0.065096678 0.559553112 0.000209702 0.138155078 0.309429730 1.889534544 4.651198951 0.025522023 1.262649426 0.000173822 0.000000018 0.006851068 0.394793455 0.004792863 0.043030389 3.394248473 0.104496079 2.328872633 4.181367154 0.595478564 0.643653114 5.572491435 0.000000001 0.918312765 0.000000003 0.000000002 3.457563565 2.366414393 0.000000002 0.000000002 0.000000002 0.000000003 1.069565870 0.000000003 0.000000006 5.383772603 0.000000002 0.703029775 0.000000002 0.302818305 0.000094871 2.345677538 0.000000019 13.939981906 0.000000010 0.000000002 0.287140027 4.821897868 0.510682872 0.175229823 0.021003594 0.000000006 6.240324483 0.446760730 0.188088364 0.000030769 0.000000011 2.450021135 0.000003530 0.004225402 0.124370142 0.000174732 0.024729866 0.030298882 0.182318171 0.000000002 13.272463189 1.723209260 0.169782757 4.344609207 0.000000005 0.000000002 0.207867351 0.029415693 0.000000011 0.000000004 0.086821700 0.078033000 0.037677600 0.048352200 0.016801600 0.056037100 0.061730000 0.055219400 0.047677700 0.037040600 0.106604000 0.031250700 0.018079900 0.030941500 0.049562100 0.087244100 0.050607000 0.008793350 0.025041500 0.066484800