Protein PHB

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	243.217931092597	0
Primates and Rodents clades	81.3604062913982	1.11e-16

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.235	0.503	0.262	0.271	0.365	0.364

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.62953995157385	0.0435835351089588	0.00242130750605327	0.00242130750605327	0	0	0.00242130750605327	0.319612590799031

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.047927505 0.122947438 0.248497406 0.801604577 0.030147860 7.810887889 0.472048476 13.391329329 1.745005644 0.000000020 0.455013056 5.732760488 1.285823801 0.059350314 0.000007847 0.593077398 0.411894609 0.133760123 2.882230751 0.704255034 1.335511788 1.112978134 3.537616617 0.835682963 1.605259380 1.275756898 0.095814869 1.980216455 0.017312085 12.013532577 4.172225719 0.369841210 25.621625652 2.816323486 0.010341630 0.000018306 0.000072023 0.079683159 1.424062229 0.000000411 0.373334825 0.081495449 0.000001973 0.003062516 0.255064140 0.041035998 1.170855207 0.156869723 0.128444014 1.393750932 0.800096986 0.252817110 0.058955094 1.393229683 1.221988949 0.415835476 3.185403690 1.968344170 0.031230130 0.000000011 1.921609221 3.826226172 0.018873364 0.001692105 0.075802086 0.022771860 0.471476410 1.361959527 1.478048043 0.000000312 0.000009439 1.971482393 0.046927349 0.337491323 0.019968979 9.511488434 5.431503769 4.393314631 0.094209472 0.004236650 0.067939066 0.089618033 2.420827740 0.000000002 0.000043084 0.090077801 0.000001389 0.543013689 2.672906271 0.000000017 1.554665527 0.933832646 1.533483981 0.362055203 0.347407464 0.000662792 1.780313712 0.405476174 0.223737377 1.405020581 0.001669153 3.754597733 0.000000076 0.442920004 0.094205159 1.808806235 1.113773474 4.380334141 0.184200116 4.917181208 0.218776112 0.257881017 2.082738477 0.079222114 0.526511054 0.768170239 0.587345028 0.000189246 2.288712047 3.920172350 4.007016285 0.891577287 2.561136684 0.012488674 0.093621924 0.380462922 0.283539223 0.196390915 0.424950333 2.159756377 0.072439877 0.822179610 12.131652960 0.000000002 0.935591179 3.422864951 0.000000007 12.603335960 1.055817928 0.000000008 1.530469799 3.751790510 0.325941749 4.573226237 0.000000071 0.000000011 0.202035403 0.000003529 3.569283349 0.753256607 0.000009705 1.028584212 0.307370050 0.000451715 0.000000221 0.000001011 1.621138428 17.979343773 0.766424202 0.000026887 0.000455086 19.314164289 0.168220838 0.596473565 0.000000014 0.000321823 7.947091441 0.026734155 2.013637587 0.790500632 0.000000038 2.448494090 0.000343006 0.000000075 0.246547437 0.698051454 0.088391898 0.519158987 0.454061284 0.126589444 3.356410557 1.834059162 0.013432384 17.096087436 0.892447054 0.000299073 0.003242139 0.132817934 0.000000016 0.000000031 0.100338000 0.062308900 0.028437100 0.047370600 0.013410000 0.053616000 0.068208200 0.061079200 0.021694700 0.075066800 0.095155600 0.043701400 0.014044500 0.045338600 0.043168000 0.066155400 0.053110900 0.006337470 0.015807500 0.085651400