Protein PHB2

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	323.343497726	0
Primates and Rodents clades	78.9239320050001	3.331e-16

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.348	0.503	0.149	0.422	0.262	0.316

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.618705035971223	0.0959232613908873	0.00959232613908873	0.00479616306954436	0.00239808153477218	0.00479616306954436	0	0.26378896882494

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.046194389 0.028670524 0.490659612 0.690447798 0.382152712 4.143131701 3.667667314 16.684185266 0.000065118 1.616798009 0.451942953 2.864866151 1.085657497 0.208114199 0.000002602 0.397158023 0.000682544 0.022825275 6.644753214 3.788195750 2.444929980 1.213241786 1.468957703 0.457691035 1.733211208 3.016045349 0.309648682 0.481366106 1.316606247 8.344670842 3.083407057 2.344716346 0.005010830 10.003718996 0.493249612 0.076533615 0.087577879 0.000369612 0.218828364 0.014487810 0.000686647 0.048429922 0.149758585 0.055842365 0.495090830 0.138832047 0.218190520 0.050538205 0.081532790 3.994866336 0.354864066 0.073139731 0.043595844 3.247955332 2.607204299 0.003364752 4.646937418 1.926911172 0.014390848 2.791262179 0.981243018 1.539823041 0.094551050 0.090942808 0.259098674 0.363420583 0.491948770 0.322315787 0.000000038 0.000001074 0.000260959 0.379719357 0.574299499 0.191136379 4.078709893 2.482576362 5.628265629 1.745033397 0.505317281 0.073965378 0.236800668 0.000000030 17.981947438 0.149126106 0.097161635 0.032292231 0.563285428 2.491223705 2.644244633 0.000000500 0.884764831 0.785643652 1.982417937 0.906737004 0.345532052 0.000057925 1.315039817 0.851368439 0.380480648 1.150184807 0.516907831 1.030567172 0.323321853 0.000001195 0.003047900 2.882010159 0.302742553 6.212198367 1.262668787 5.523543711 0.674287791 0.418153236 4.460741968 2.221531928 0.336152569 0.873539023 0.724152485 0.000001545 1.016282529 4.037169369 4.191916569 0.687308204 1.281208714 0.000350316 2.597549329 0.245691811 1.139586420 0.000002102 3.042161450 2.668236336 0.564956542 0.691211139 5.905377302 0.540441056 1.758878113 3.761247273 0.000000017 16.666468343 0.000000080 0.000000019 0.000015348 1.600520659 0.000000049 3.093467878 18.655630701 0.000000003 0.000004645 0.000000047 0.000000070 0.000000167 0.000000181 2.130500767 0.000000054 0.031972037 0.031484163 0.000023426 0.431125858 22.043332504 0.000001811 0.000037372 0.413744484 5.049386600 0.084548563 0.066426810 0.354562644 0.008863089 6.208313836 0.000023252 0.171032805 0.794291654 7.489452592 1.976181820 0.000000027 0.000000308 0.368576893 7.447432020 0.279099383 0.325890992 0.611839928 0.000000120 7.122771034 2.122712173 0.165409668 3.892391406 0.749944115 0.259836664 0.374920337 1.690128966 0.000000020 0.000000917 0.096271000 0.075633900 0.042613900 0.043398000 0.005664570 0.070986900 0.055278300 0.068299400 0.010172800 0.065916200 0.096057300 0.065155200 0.025581600 0.033551300 0.038203500 0.074062400 0.040312900 0.004920640 0.030152700 0.057767400