Protein PNPT1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	189.734831166599	0
Primates and Rodents clades	106.179634503002	0

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.395	0.35	0.255	0.483	0.337	0.18

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.829185520361991	0.0531674208144796	0.00339366515837104	0.00113122171945701	0	0.00565610859728507	0	0.107466063348416

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.232557249 0.083377808 0.178165877 0.346720492 0.045855632 5.570843495 0.771996188 2.889392972 0.000063392 0.001008555 0.056755464 2.469828582 0.270617527 0.277620994 0.407628467 0.609125213 0.018029502 0.682430387 7.128819799 0.197525856 2.586080551 1.945848572 2.394527377 0.993424383 1.038618743 1.929497011 0.094301876 0.814359116 0.290501853 1.876723353 8.524324940 1.551497570 0.765375867 11.163830803 0.042308183 0.050672538 0.019371665 0.127334762 0.241729617 0.000000184 0.182084300 0.036389274 0.000000127 0.000123650 0.000009284 0.430728678 0.776862240 0.111271310 0.161066726 1.065010678 0.629549871 0.039686669 0.472099225 1.076286247 2.696695490 0.272158106 7.729672919 2.440316889 0.031045166 0.000264393 2.018676986 1.500230299 0.039157501 0.191328051 0.115210417 0.061130465 0.227561584 0.019165727 0.074259910 0.109133226 1.761984409 0.454727043 0.118094777 0.224253869 0.383624513 4.494549410 6.073954669 0.227470405 0.112499144 0.395045232 0.051257844 0.079017465 0.007348354 0.000000315 0.000000014 0.205486966 0.649649765 0.979502156 5.139614564 0.285967123 0.057202838 1.961912699 0.794494777 0.020416940 0.284717651 0.001228981 1.845116468 0.305243650 0.001501646 2.578301263 0.012665547 1.306214881 0.000017846 0.003253645 0.376259243 2.574276273 0.626672417 7.436211669 0.538526118 4.594448656 0.944841313 0.118161688 2.338536872 0.277506740 0.095354453 0.674305778 0.404840609 0.022420673 0.905001761 3.298526622 3.831630776 0.588998044 1.372555336 0.000053423 0.092519692 0.303637533 0.006045431 0.162633782 0.000093512 2.339812560 0.000162929 0.965530718 1.628907665 0.295594179 0.617918112 5.779609555 0.709183596 15.310899743 1.415002579 0.000001453 8.285982163 2.479351541 0.000608573 0.081648177 0.000128177 0.000003582 3.536667341 0.991303914 2.440440325 0.002465748 0.409788882 2.070181703 0.000021470 0.000568951 0.999663819 1.657779694 0.000050783 10.679680763 0.000243605 0.193912960 0.090749974 17.342858861 0.390979004 0.391523798 0.000013321 0.021737262 10.799485586 0.600691451 0.768859185 0.467924453 12.182669536 2.227899348 0.164234050 0.056962283 0.134274036 0.280330696 0.017917614 0.128789501 0.276817522 0.000873029 10.022582705 1.634455619 0.096739699 3.020659134 0.706293920 0.079060410 0.193606595 0.305133678 0.032128368 0.333319507 0.086154700 0.058896800 0.041288900 0.050742200 0.017278700 0.042303400 0.064264400 0.052688500 0.018287700 0.076120200 0.076614500 0.058083600 0.025126900 0.026126800 0.046973700 0.089057400 0.060338800 0.003517390 0.022662700 0.083472800