Protein PTCD1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	344.020214851203	0
Primates and Rodents clades	28.6733158441966	9.108e-06

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.224	0.269	0.506	0.275	0.29	0.435

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.449486301369863	0.148116438356164	0.00856164383561644	0.00599315068493151	0.00171232876712329	0.00599315068493151	0.00770547945205479	0.372431506849315

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.125208753 0.058580560 0.121170287 0.586669203 0.002682342 6.386660112 0.764413163 1.197550488 0.000068235 0.018708268 0.116739587 4.974302117 0.130277757 0.101163012 0.442404345 1.000397959 0.171406204 0.296142619 4.057891454 0.050627722 2.283245636 1.353934597 2.341249341 0.547584728 1.793823120 0.391514958 0.301263815 1.588752020 0.018631466 3.533644357 1.293343109 2.781189117 2.505555411 5.640903988 0.008409110 0.564542953 0.003584604 0.116334979 0.007380458 0.066805125 0.293543465 0.073841951 0.051403168 0.012430337 0.334232006 0.052274958 0.393747202 0.000001813 0.027833965 0.474804387 0.634430048 0.019113643 0.027685888 0.485596109 2.862180910 0.187397666 5.248832336 1.453756704 0.002651778 0.061568491 2.034385647 1.813170851 0.235229148 0.005697088 0.001695554 0.017024667 0.266608937 1.081483483 0.000018020 0.000976882 0.441963564 0.026280868 0.368093415 0.064760507 0.010099833 3.655780980 3.575468385 0.289090199 0.114988919 0.200534887 0.000834762 0.000000490 1.553024178 0.000071617 0.057470336 0.069216152 0.003572165 1.163505559 2.715292623 0.000243939 0.167125177 1.562985413 0.455692346 0.000067174 0.005497845 0.280592577 1.124612611 0.065781190 0.154368512 2.104163084 0.130445921 1.840287294 0.100373637 0.208722911 0.189970730 2.214493863 1.152755369 4.693678606 0.630247133 3.925790929 0.521728700 0.037530953 2.444421810 0.736311563 0.257593266 0.518965808 0.328718676 0.020555800 0.847959836 2.659782012 4.424973129 0.661913883 1.862354643 0.195736840 0.286236014 0.409983403 0.305578088 0.182661228 0.128186913 2.506447033 0.016593585 1.028666097 4.059327858 0.008814205 1.083337994 3.574010293 0.000071848 3.024322914 0.000003197 0.000056305 2.844083357 1.365904749 0.008918250 1.726731482 0.536848650 0.453627112 0.738588542 0.000001402 0.637763351 0.587194945 1.109224539 0.092302842 0.065999133 0.005637090 0.035434996 0.000000074 0.072060656 2.807536319 0.000163100 0.000159239 0.002596153 8.332958519 0.000395809 0.186189725 0.000001546 0.133415246 6.233421853 0.000000626 0.748607040 0.000002153 0.005748680 4.526353380 0.384797980 0.013120843 0.260795624 0.264384732 0.019764675 0.916203555 0.912149140 0.062350129 11.638342647 2.542179510 0.096090907 7.700853898 0.627439958 0.003527245 0.153673661 0.774983835 0.000389866 0.113448676 0.085687300 0.075492600 0.036006300 0.052097500 0.015336400 0.055854700 0.079516500 0.062834900 0.022677900 0.029509700 0.098519400 0.068087400 0.020224900 0.025794500 0.060792200 0.077550700 0.054439200 0.009912050 0.021275700 0.048390300