Protein QDPR

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	190.481036955003	0
Primates and Rodents clades	8.84964629119986	0.06497

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.35	0.361	0.289	0.371	0.35	0.278

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.597058823529412	0.102941176470588	0	0.0117647058823529	0.00294117647058824	0.00294117647058824	0.00294117647058824	0.279411764705882

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.545550400 0.162632892 1.441697732 0.521523352 0.263559930 6.338825000 0.768047102 1.258102041 0.000000016 0.000000004 0.189970124 5.885921355 0.515413568 0.369156754 0.000000034 1.283288572 0.519158393 0.678322024 11.208161729 0.000000007 5.475739906 1.474955107 2.744426825 0.335884245 1.810047457 0.000000007 0.000008331 1.667606256 0.129197324 4.358486131 3.756977456 0.877200364 1.168435327 6.383718492 0.673690584 0.053171388 0.000000735 0.000000265 0.000000003 0.000000003 1.671631832 0.000000333 0.000000249 0.000000001 0.000007530 0.054861188 1.188638548 0.000005371 0.000000922 0.368104555 0.395014478 0.129099029 0.000023235 0.166779292 1.393927009 0.512871264 8.205695007 3.291275413 0.128071102 0.057748527 4.990086817 2.054664077 0.191950936 0.000011852 0.000419799 0.000000490 1.730266817 2.826915467 0.000083551 0.000000003 1.832332408 0.000004755 0.000000008 0.629201567 0.000002265 5.534502599 3.265763222 0.381789578 0.003493175 0.000005720 0.000000588 0.000369057 0.000000021 0.581037288 1.060625925 0.000694451 2.063435905 1.713173509 3.676078788 0.188286508 0.000003819 1.504298632 3.396624410 0.000000462 0.201253058 0.609697857 0.046096435 0.538998699 0.454685311 1.869585791 0.000000610 1.222377779 0.001832813 0.000005072 0.347491023 3.152406757 2.121186247 6.413138325 0.500190768 5.800977248 0.686101107 0.258479591 1.755914467 0.121142943 0.001173885 0.238220585 0.213545562 0.488634182 1.091376404 2.458168027 2.578583120 0.756785543 0.036057200 0.001451255 1.095235020 0.679402077 0.678986555 0.001019085 0.014566598 1.924110805 0.366501107 0.846692518 1.792621448 0.372303709 0.014109627 3.034815177 0.139389292 0.000005173 0.852034956 0.000000003 0.000000007 0.941999252 0.000000002 0.351713175 0.048255778 0.461595986 0.875942325 0.423370196 0.000000014 0.513280358 0.533742735 0.001036293 0.000117369 0.000000731 1.415567106 0.575273172 0.724601739 0.000000015 0.027955708 0.000001003 0.035248239 22.681122246 0.000000636 0.000054047 0.000210891 0.000000032 17.548150242 0.000000313 0.996602495 0.000001880 1.085802833 1.495812608 0.000000363 0.000000594 0.190892010 0.928134260 0.240203731 1.263741060 0.230260423 0.811443583 12.868670707 2.519183089 0.045385902 0.789485031 1.253546489 0.361933209 0.061683198 0.870023540 0.088110353 0.000000210 0.125854000 0.033611900 0.038391500 0.038266400 0.013937100 0.037677100 0.057968600 0.082031900 0.022611800 0.034500300 0.087642300 0.060576300 0.033860300 0.028655100 0.039472200 0.086534100 0.071622200 0.021360600 0.017586700 0.067839400