Protein SDHAF1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	17.5970072226	0.001479
Primates and Rodents clades	9.55674558240025	0.04859

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.262	0.351	0.386	0.379	0.287	0.334

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.686131386861314	0.109489051094891	0.0072992700729927	0	0	0	0	0.197080291970803

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.125679679 0.323018792 1.401158000 0.469600365 0.000000001 14.373457304 1.673192893 0.205127149 14.075215410 0.000000029 0.001589598 1.784512296 0.000028647 0.000000001 0.000000012 0.445972404 0.099324862 0.000000526 4.202967845 0.000000012 2.366395292 2.842375710 0.757629642 0.000011958 4.005609535 6.520217398 0.338369789 1.532878636 0.000000001 2.110328028 17.935399852 1.972245465 0.000000012 2.452045120 0.000000001 0.000000001 0.000000001 0.000000001 0.000000008 0.000000001 0.000000012 0.000000002 0.000000026 0.000000001 0.000000004 0.068588963 0.401128363 0.000000008 0.000000001 0.000000012 1.245638058 0.292288344 0.000000011 0.889710900 3.027523292 0.000000038 4.450694655 2.215719975 0.000000001 0.000000012 0.085869740 4.099989950 0.000000001 0.001646233 0.000000004 0.000000001 0.833901009 0.000000001 0.000000008 0.000000001 0.000000012 0.000000038 0.000000001 0.681848272 0.000000004 0.000000004 1.983120077 1.790385211 0.610832719 0.000000001 0.000000008 0.000000001 0.000000012 0.000000002 0.000000001 0.000000001 0.000000004 0.000000004 2.571802223 0.000000004 0.000000005 1.292339811 0.714322476 0.000000239 0.465104763 0.000000012 0.733936243 0.000001805 0.000114802 2.632014238 0.000000004 2.343856201 0.787614169 0.284615426 0.669357273 3.535066418 0.857772766 12.095567636 0.101323691 11.265111251 0.534205002 0.406232939 3.911215465 0.461458527 0.000000004 0.661754104 0.000805885 0.000022981 0.000000007 1.672680075 9.027057293 0.210057683 10.368656965 0.000000001 0.000000015 0.900863168 0.000051024 0.180643749 0.000017192 4.476423997 0.000000001 5.861848942 6.260410113 0.000000007 1.903080145 4.704496007 0.004577919 5.293070796 0.000032791 0.000000001 0.000054983 9.978283472 0.000000073 0.000001984 0.000000322 0.000000004 0.000027577 0.000000396 29.462033078 0.000000007 4.202227215 8.472161633 0.000080492 0.416510045 0.000000001 0.000000008 0.548533438 10.787965048 0.000000002 0.000000001 0.000000001 1.578773497 0.000000004 0.472403106 0.000000004 0.000000005 2.699894515 0.000000001 0.000000001 0.000000002 0.000000036 4.449358853 0.000000001 0.000000008 0.470584803 0.000000012 0.000000002 0.352801930 0.578050515 0.000000004 16.490101613 0.320687578 0.000000004 0.000000005 2.147935713 0.000013920 1.185416718 0.055899017 0.000000036 0.000000005 0.081619400 0.138342000 0.013207400 0.070273200 0.008325750 0.050975000 0.073631400 0.109670000 0.025790400 0.023205800 0.077535900 0.027426500 0.018755800 0.013651200 0.091684000 0.072895800 0.045853400 0.002770840 0.020695900 0.033690500