Protein SMDT1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	30.2292642268003	4.396e-06
Primates and Rodents clades	5.0318434167998	0.284

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.3	0.254	0.446	0.398	0.2	0.402

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.356643356643357	0.125874125874126	0	0	0.00699300699300699	0.013986013986014	0	0.496503496503497

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.650116108 0.001319926 1.958558089 0.146742437 0.000000001 4.148925812 2.233916599 6.297709179 0.087790359 0.000000003 0.000037019 13.834615442 2.953783639 0.783461481 0.000001050 0.513255110 0.000000001 0.000153606 6.401587805 0.000000011 0.000000007 1.861193786 1.835890860 1.328440800 1.172226763 4.026552330 0.003212664 0.437671391 0.000000941 1.395848698 14.568276141 0.000000003 0.000778123 0.000084903 0.000000006 0.723818906 0.000727280 0.151009725 0.000000005 0.000000003 0.000000013 0.000000079 0.000000006 0.214040348 0.000000008 0.223539657 0.216735045 0.000094597 0.075654886 3.131831801 6.441849845 0.000000481 0.190674889 0.784281324 0.725034648 0.000768056 2.594443444 7.151822770 0.000000003 0.000000536 8.181303888 2.738158740 0.008287692 0.000000063 0.254949844 0.000457751 0.290818479 2.041655245 0.000067179 0.519725803 0.002178577 0.000029603 0.000000006 0.398597768 0.000000054 2.315074354 0.964226385 0.000000005 0.167432543 0.000000001 0.000000005 0.000000003 0.041673267 0.000000007 0.000000006 0.017164967 1.327275302 1.653865179 1.712747537 0.000000003 0.000122131 0.941087490 0.556389649 0.000000009 0.000000003 0.000000304 7.630985243 0.000000006 0.000052561 0.000000013 0.000025929 1.068242346 0.003233820 1.715196645 0.000000002 1.840547833 0.399032655 7.809061067 0.000000003 11.988841823 0.000005419 0.000000006 1.932836048 0.078407976 0.000012630 0.095986675 0.000429199 0.001029309 1.752788773 2.966846075 3.577211774 0.034483083 2.315831080 0.000000003 0.123001688 0.027989435 0.000000006 0.659417273 0.000000132 1.585030815 0.306063056 1.200463411 2.779757085 0.000561719 0.697484979 2.650494826 0.000000644 11.389471608 0.000000005 0.000000003 33.828563557 0.000000561 0.000000006 4.195220782 0.000001069 0.000000002 4.677053028 0.000000003 2.166425680 0.000000002 0.000000001 1.385955193 1.691294926 0.000000021 0.000000001 0.837746253 0.000000003 10.756919333 0.000000007 2.594620971 0.000000001 8.251863636 2.281117286 0.000000001 0.000000003 0.000000005 0.968389293 0.000000001 5.153724813 0.000000002 0.000000009 2.719730172 0.000180339 0.000000005 0.157144287 0.000000240 1.095852503 0.679664674 0.986559085 0.535197941 4.844162905 1.324537888 0.000000204 2.005306536 0.829264709 0.000691554 0.000016476 0.564081384 0.000000364 0.000000012 0.122300000 0.087187100 0.020745900 0.029978500 0.008711100 0.014671500 0.016497400 0.078774400 0.012006100 0.044880200 0.113771000 0.034008700 0.020748000 0.046965100 0.069617700 0.106502000 0.063314800 0.011637500 0.008232810 0.089450500