Protein SQOR

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	251.915028629403	0
Primates and Rodents clades	49.4063792187999	4.803e-10

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.376	0.37	0.254	0.468	0.339	0.193

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.590839694656489	0.0870229007633588	0.00152671755725191	0	0	0	0	0.320610687022901

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.073610036 0.129382123 0.291506766 1.538718244 0.079778862 7.710925816 0.061873334 4.048807316 0.000006776 0.000374756 0.543526337 4.047560145 0.541733683 0.146828771 0.000017718 0.905224341 0.128689632 0.002237464 8.271726132 0.475234886 4.837558699 2.093869488 0.396716874 0.674739223 0.788096651 0.344681263 0.555011927 1.196507378 0.150184250 7.342544678 2.426422867 0.269277852 1.948545915 4.842613203 0.376164965 0.063175167 0.091560936 0.058882003 0.474493731 0.000010025 0.051139552 0.269131173 0.130876967 0.096842949 0.868316004 0.141795116 0.812908014 0.002919194 0.067184101 1.482016782 0.339224445 0.125570705 0.136870360 0.380844258 2.391538263 0.326117343 7.043407680 2.550438782 0.025262719 0.000248763 3.315306432 2.104917957 0.227904911 0.002357496 0.000394370 0.209270080 0.545890595 0.769504423 0.000017565 0.000000407 0.884901357 0.524582817 0.000001343 0.437333224 0.000037298 3.235793091 4.649455380 0.794536121 0.143453433 0.154409976 0.065686814 0.000125489 2.830634086 0.001041781 0.000079069 0.302185955 0.050959152 1.871108433 4.101844868 0.000006095 0.177612067 1.240584364 0.590829818 0.000001205 0.087709163 0.517602076 1.290987546 0.000029020 0.000785519 1.028625287 0.558855915 0.727173366 0.067168748 0.280305160 0.001631092 4.928603792 1.327351684 3.776112945 0.812452329 5.998160842 0.327813217 0.064890947 3.074564010 1.894570066 0.098552947 0.770957356 0.368742029 0.150044077 1.194247512 4.062267321 3.656487011 1.856773671 1.811572938 0.073022543 0.941044085 0.120994368 0.106450670 0.030895660 0.575132848 1.488569195 0.306338392 1.816790747 3.254087321 0.416522501 0.323042139 4.377909251 0.020971682 0.856332050 0.000000010 0.000000084 3.496300509 1.419419255 0.226561880 0.427467340 2.876265577 0.000000153 1.076950482 0.000000020 0.000000082 1.763551560 0.000000006 0.001180523 0.875634812 0.203608509 0.098527521 0.382641064 0.020134867 0.746305046 0.000000347 0.000006406 0.124389330 10.019660693 0.000121069 0.034235938 0.144660053 0.000000061 6.918447535 0.000036728 0.209578415 0.238497987 1.368997229 2.928175094 0.349203753 0.074626588 0.000001611 1.160877956 0.504681018 0.381027007 0.522621502 0.246514812 10.490803707 2.070005564 0.113150118 1.405953118 1.007473994 0.059632160 0.153578675 0.895426201 0.205401340 0.110568474 0.077910300 0.048910700 0.042526800 0.042478800 0.016529300 0.040162200 0.051686100 0.063258400 0.023447800 0.055761600 0.090944200 0.090250900 0.030515100 0.035376000 0.047678300 0.073880700 0.057024800 0.006607990 0.034219700 0.070830300