Protein TEFM

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	136.767275203398	0
Primates and Rodents clades	19.6734555941985	0.0005792

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.197	0.254	0.55	0.254	0.334	0.412

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.549348230912477	0.11731843575419	0.0074487895716946	0.0130353817504655	0.0111731843575419	0.0074487895716946	0.0111731843575419	0.283054003724395

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.000135012 0.059134942 0.052907831 0.479268349 0.035731002 6.362902320 0.139751313 1.401857102 0.369207437 0.394505689 0.007176529 4.309338935 0.104170411 0.076802924 0.248075133 1.316560529 0.197419545 0.298877530 6.539008430 0.000000808 2.875978711 2.595205999 2.862010454 0.521187908 3.687177976 1.259067276 0.189057126 2.303724787 0.018115558 3.483720761 6.227204217 0.598467252 1.041745562 10.371709048 0.000006382 0.000000037 0.011135654 0.315941088 0.499150424 0.000000028 0.000000005 0.089686103 0.017397009 0.210696036 0.212092494 0.014487628 0.399893151 0.002623294 0.000000076 0.695489115 0.451209935 0.000390517 0.190367313 1.343014577 1.917389563 0.000503451 6.317349547 2.411087083 0.000001878 0.000000005 2.006422235 2.687582947 0.663117002 0.000000864 0.000000505 0.014957435 0.530727157 0.854638809 0.000000119 0.000776106 0.000000005 0.000011641 0.000000020 0.000000185 0.000004672 4.806025759 3.267624185 0.538482619 0.089101783 0.014347889 0.000000017 0.000000208 3.156745928 0.023017197 0.000000087 0.213240680 0.753390893 1.007525670 3.906453081 0.032884657 0.241886164 1.134218070 0.228568046 0.007357561 0.357847079 0.242976849 1.854327617 0.257910785 0.127770871 2.189291045 0.000000022 1.316494436 0.000000300 0.382044814 0.001395413 2.167495623 0.927315610 3.637518957 0.441160172 2.886474668 0.128414429 0.031342749 1.129496421 0.156964690 0.118959986 0.838155792 0.125862186 0.000257125 1.280072788 3.954329167 6.091913417 0.489266569 2.531197925 0.295131757 0.000000005 0.092494145 0.371240663 0.314452908 0.000000379 4.613814326 0.051341656 1.601450529 3.394269038 0.024309617 0.960583030 3.910182571 0.000000002 4.306151689 0.000000078 0.000000004 6.651410698 0.010023111 0.000000001 0.001436141 2.442175147 0.000000041 0.537937881 0.000000001 0.000000045 0.353432589 0.450612111 0.221952568 0.569379151 0.310000155 0.078139437 0.899274935 0.000000049 6.877111862 0.073205441 0.000000001 0.182744235 17.452592006 0.000000002 0.000168553 0.104896228 0.000000004 5.014945245 0.286190474 0.365708254 0.016867379 0.027176810 3.159717380 0.131539470 0.078359687 0.159758533 0.001280832 0.012513802 0.095687457 0.779129005 0.000000175 11.384544738 2.014546793 0.256639838 1.841519116 1.033661289 0.000000208 0.095214845 0.132365194 0.227140694 0.000000005 0.064539000 0.065887600 0.042727200 0.042407500 0.019118200 0.042275000 0.072938400 0.038689100 0.021705200 0.045949400 0.103253000 0.072249500 0.025528000 0.045666700 0.048210200 0.097491100 0.051945000 0.008444810 0.019052200 0.071922900