Protein TIMM29

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	171.444576345399	0
Primates and Rodents clades	19.4391466688003	0.0006442

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.186	0.396	0.419	0.24	0.401	0.36

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.667692307692308	0.113846153846154	0.0123076923076923	0.0153846153846154	0.00615384615384615	0.00307692307692308	0.00615384615384615	0.175384615384615

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.067820460 0.068780806 0.291673220 0.512107673 0.000010415 3.461817907 0.497059338 1.053208522 0.000000004 0.000026360 0.000353508 3.780254745 0.000077456 0.000540166 0.000000005 0.784932585 0.000061076 0.763526592 4.597010148 0.324556628 3.621723129 2.357585779 2.229937756 1.544243373 0.544862141 0.319631233 0.660030065 1.094078001 0.085027984 3.794511573 3.214251362 2.826776533 0.002398263 6.213343575 0.000037501 0.025663459 0.004217739 0.001825315 0.000007334 0.000000002 1.541691518 0.000152118 0.031163992 0.000054673 0.000000018 0.260190956 0.396354551 0.000000004 0.039376916 0.000001762 0.867242834 0.064031940 0.061544580 0.514052071 1.361260572 0.117115305 5.518037717 1.646204049 0.000002089 0.000000005 2.379374856 1.377502913 0.001737580 0.349958838 0.569199664 0.051108676 1.779271473 1.376632605 0.000000200 0.271618566 0.000000010 0.000013597 0.571517880 0.000038984 0.000000034 2.237947582 3.069636101 0.456159377 0.429100550 0.028555749 0.000000004 0.000000002 7.315297680 0.000000002 0.000000013 0.000000298 0.895376769 1.234251054 2.616296272 0.000000002 0.000000068 2.444772156 0.743556988 0.000000004 0.239036321 0.282203938 0.134389299 0.487399864 0.024201287 1.516568230 0.000009080 0.791840259 0.019307022 0.000000006 0.044264654 2.216149394 0.379270118 3.865519064 0.335999278 1.834008778 0.091656025 0.455997045 3.213799152 1.524505106 0.000238351 0.251019079 0.362694163 0.719362401 0.917680783 1.976266405 10.117817280 0.879850009 2.079790300 0.965390597 0.008527326 0.417055045 0.008837959 0.137960217 0.088041069 5.283877414 0.000327885 2.022004062 5.789379861 0.000002306 0.213230299 5.859344322 0.001234696 0.631319537 0.000000004 0.000000002 0.000000005 0.067210318 0.000000001 1.745473240 0.000000004 0.000000005 0.506502346 0.106589484 0.000000008 0.165142894 0.239665490 0.391564544 0.154185854 0.000000001 0.006509917 0.244781536 0.263633043 1.229962226 0.000004481 0.000000001 0.000141259 10.329633679 0.000000769 0.059551950 0.064781388 0.000000006 7.727388036 0.000000003 0.000411087 0.000000003 1.819675123 3.730697682 0.069300861 0.202006383 0.089526285 0.796066617 0.053302436 0.324135428 1.181849111 0.000007569 22.255022916 3.192751497 0.200896364 5.122629760 0.337099638 0.117830012 0.031208964 2.057467664 0.000000736 0.000518711 0.125788000 0.088378700 0.025159700 0.048738200 0.019616700 0.042441400 0.077419800 0.066134500 0.023686900 0.021317300 0.095650100 0.052835700 0.016380200 0.027593800 0.038569800 0.071050100 0.035440800 0.023559700 0.026604400 0.073634500