Protein TIMM9

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	9.49789741419954	0.04979
Primates and Rodents clades	1.54298665400006	0.819

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.267	0.439	0.294	0.308	0.404	0.288

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.585714285714286	0.0428571428571429	0.00714285714285714	0	0	0.00714285714285714	0.0142857142857143	0.342857142857143

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.000000084 0.000009226 0.000303801 0.380605116 0.000000024 1.888250005 0.000000002 0.616997277 0.000000002 0.000000002 0.840204104 1.311330992 0.639008995 0.175129447 0.000000004 0.788248900 0.000188170 0.272510639 2.851590416 0.000000004 1.962826599 2.742522831 1.089376476 0.808852571 1.456522788 0.743415884 0.001744458 2.068163936 3.418071430 3.858113885 6.751253268 5.588903260 7.441930808 2.953815845 0.000000229 1.914800229 1.456653245 1.136311647 1.261926733 0.401431484 0.000000004 0.119595431 0.000000019 0.760369181 0.000000007 0.000106222 0.359213664 0.170813088 0.000000002 0.307832462 0.738673040 0.000000275 0.001660750 0.000000007 0.287768764 0.000000052 4.494203320 1.622255678 0.263042287 0.000000004 0.550214772 1.011202017 0.109739725 0.000000007 0.221105609 0.016458330 0.011271987 1.499937961 0.972370292 0.000000038 0.000000004 0.477374070 0.587691700 1.149456570 2.017768139 8.033515954 3.787247344 0.000000311 0.000000002 0.000000002 0.199487583 0.000000002 0.847925725 0.000000001 0.000000001 0.000000002 0.000000007 0.536038464 2.190164732 0.000000001 1.478155165 4.446888273 3.013438732 0.000001608 0.865142381 0.000000004 1.269041544 0.000000003 1.688774971 0.000000007 0.000000002 1.958952308 0.596075484 0.000000003 0.547142207 3.912331413 1.741429058 7.585563443 0.126751869 0.649337282 0.752927688 0.654258394 1.718144416 0.000419522 0.007152582 2.345865343 0.694220262 2.118343608 0.965204876 3.133812897 2.661045510 0.344595067 1.683163019 1.381699805 0.000000004 0.837823639 0.000048007 0.099343483 0.000000007 3.123961617 0.291112418 0.252507769 0.000338680 0.000000003 0.634083946 4.530179955 0.000000084 0.001090380 0.003549508 0.000000016 0.000000010 0.000001651 0.000000863 0.005510847 0.000000007 0.000728878 59.453651925 61.800582875 0.000004281 0.000000003 0.000391635 0.012991172 0.000000254 0.000000002 0.000000002 0.700601070 0.011982463 6.085575651 0.000000001 0.327839706 0.000000002 17.719575936 0.000000002 0.000000008 0.433455095 0.000000002 6.622952294 0.000000003 1.637429466 0.000000001 0.000001794 1.018113084 0.000000380 0.000005751 0.000000027 0.844006134 0.000196468 0.331705412 2.008813694 0.000000007 13.321507590 5.053671969 0.286008800 5.586084458 0.000000003 0.961160820 0.000035837 1.334163355 0.000786980 0.000000004 0.063379600 0.044327100 0.044104700 0.045617000 0.023803500 0.092889000 0.089091100 0.045452000 0.014846800 0.049355600 0.083814700 0.090997200 0.041625400 0.037798400 0.032835400 0.057897700 0.075821300 0.000670605 0.022761000 0.042911900