Protein TIMMDC1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	125.059674280998	0
Primates and Rodents clades	16.6999380354009	0.00221

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.167	0.271	0.561	0.21	0.367	0.423

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.608910891089109	0.0915841584158416	0.00247524752475248	0.00247524752475248	0.00495049504950495	0.00742574257425743	0.0099009900990099	0.272277227722772

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.089337681 0.047403896 0.477655689 0.481168164 0.034046252 9.182996693 0.499107949 2.718858164 0.000000756 0.109404857 0.410386473 4.151573457 0.000477003 0.183336592 0.000002570 0.696727502 0.004043271 0.000903735 6.436610232 0.000001069 3.687582897 1.722172035 0.694744807 0.002106703 1.226897945 4.022653599 0.137121379 0.959646609 0.000047360 3.038280302 4.785296565 2.865426084 5.710864558 11.260039520 0.000017878 0.420714794 0.484755916 0.059088524 0.392913698 0.018311444 0.000040302 0.000000349 0.000000001 0.042939347 0.000211439 0.005004157 0.397386052 0.000000009 0.000000539 1.899364081 0.766503095 0.037520794 0.032763469 0.397520636 3.440294816 0.230216952 5.258161464 2.329720896 0.000296784 0.000000098 2.462345758 3.642782218 0.170860276 0.000013602 0.000040334 0.042548855 0.235249270 1.088340993 0.000000014 0.000001083 0.000218397 0.005458811 0.664028543 0.000000082 1.852845000 7.658345946 7.090371589 1.908585868 0.019774199 0.000000002 0.000000047 0.000000003 4.001272917 0.000000002 0.000000001 0.000000007 0.000000196 2.373390112 3.484491979 0.002749750 0.153526735 1.143542974 1.884623743 0.000000147 0.164286801 0.259279076 1.282295642 0.103129552 0.000021762 0.058493038 0.000024892 1.451934732 0.167337656 0.491021023 0.491790831 1.855670952 0.673218100 4.600280923 0.792495668 6.450774268 0.177248717 0.000369795 2.510036009 0.962105899 0.000800211 0.356429453 0.268657564 0.000084609 0.970281619 3.722082944 3.748433510 0.308606442 1.692323521 0.327809372 0.082728464 0.483049307 0.242306499 0.000056286 0.000022241 1.514047717 0.120049362 0.654526044 5.354429854 0.390162508 0.815957009 4.227367596 0.000000030 1.653720165 0.000000013 0.000000019 6.197151040 0.569604761 0.062911785 0.006128730 0.285298829 0.000000002 0.721352530 0.169788634 2.085873480 0.966514805 0.000000006 0.000006119 0.040377965 0.073260090 0.429553538 0.827145767 0.043732449 17.752439307 0.153119260 0.134002246 0.405064824 10.862071612 0.230546009 0.000054200 0.000000002 0.000000013 7.477693650 0.432834965 0.074829048 0.143646312 0.157252097 3.699808008 0.104146856 0.000000658 0.259443693 0.000010759 0.000000025 0.261649948 0.279287569 0.316595109 10.480159126 2.439808035 0.295061607 7.043915812 1.050160238 0.000013812 0.012702712 0.522804855 0.000000009 0.000004827 0.097191800 0.075464400 0.033532300 0.036821400 0.009270050 0.051720600 0.067687000 0.067706200 0.019541300 0.047107300 0.091162500 0.051049000 0.016852700 0.037007400 0.050578400 0.087729300 0.053550000 0.017392900 0.026670000 0.061965600