Protein TRNT1

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	208.580887390599	0
Primates and Rodents clades	45.0574377807998	3.868e-09

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.301	0.376	0.322	0.309	0.365	0.326

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.586538461538462	0.100961538461538	0.00641025641025641	0	0.0016025641025641	0	0	0.304487179487179

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.087900206 0.061988212 0.380002201 0.684455884 0.063289070 2.863000989 1.203142435 3.201544555 0.000225499 0.000001495 0.135716828 2.534946241 0.135665215 0.095631228 1.121456685 1.311739720 0.048114614 0.901487546 5.112996363 0.000001469 5.579555474 2.558734538 0.601557824 0.082361518 1.623857163 2.427524396 0.118727583 1.100610193 0.273329523 3.856533074 4.189170176 0.687762128 3.668858605 5.881950457 0.425149454 0.566394232 0.009852719 0.051528799 0.084046859 0.000005737 0.008633906 0.013249345 0.005213956 0.019496981 0.000100668 0.309227415 0.396162435 0.000006606 0.000000093 2.115344974 0.556862385 0.044513848 0.120152516 0.221337976 3.246377622 0.550685921 5.727202959 2.134460293 0.030534441 0.004075565 3.785492861 0.758276072 0.004390677 0.107418020 0.315066298 0.000247056 0.603057550 0.208903960 0.000579837 0.000000076 0.019515825 0.324280169 0.112223029 0.118556548 0.281251869 4.956792367 4.006013139 0.055547885 0.005090481 0.081278676 0.000000018 0.000000002 5.000235066 0.000009941 0.048479130 0.011337869 0.373670277 0.770538302 2.605557930 0.000006568 0.424721608 2.357288080 0.095035229 0.201719191 0.011449893 0.462540157 1.599463792 0.004079650 0.000009231 2.488968973 0.002364539 0.683537913 0.414437730 0.300415683 0.000000065 5.307996933 1.761733810 5.120094616 0.821795117 11.494596501 0.054700597 0.017495953 1.674308487 0.392124862 0.003218740 0.324926202 0.320566879 0.001367957 0.265272917 3.487140544 4.827184918 0.789467653 1.706171430 0.508145195 0.257600159 0.056516882 0.098891508 0.001205642 0.001367936 2.314166177 0.143695149 1.102053749 2.421308397 0.220052684 0.952794178 4.586831010 0.087904656 2.341846681 0.000000973 0.000000004 12.358674229 0.000002076 0.049813350 1.145813534 0.029841375 0.298444823 0.469803107 0.000609451 0.000088581 1.434361904 1.293237847 0.269219406 0.000008423 0.000010011 0.028008257 1.615689073 0.214173287 7.138646624 0.267120555 0.152693804 0.000844413 9.244130017 0.412719090 0.000311902 0.000001055 0.016487070 7.628087413 0.000000246 0.853542516 0.001575638 1.521266073 3.550975144 0.175552182 0.157720863 0.000010341 0.372175443 0.144326927 0.208898765 0.470700902 0.733242993 12.286715307 2.498931550 0.020316695 2.752300571 0.440757773 0.023950725 0.006847799 2.063579097 0.298418284 0.000141553 0.058432400 0.066323300 0.049040500 0.061754200 0.016591100 0.050129800 0.082400200 0.047876900 0.027082700 0.053659500 0.100613000 0.084737700 0.026895500 0.038227800 0.039768400 0.057538200 0.048512800 0.011424300 0.026248400 0.052743600