Protein UQCRQ

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	60.2871541900004	2.525e-12
Primates and Rodents clades	24.6271113076	5.978e-05

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.187	0.332	0.481	0.299	0.294	0.407

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.496350364963504	0.0656934306569343	0	0	0	0	0	0.437956204379562

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.000000001 0.000000001 0.053668864 1.603504473 0.110242156 5.291874311 2.127978795 13.073007797 0.000001198 0.000000726 0.132430738 3.577014711 0.000001747 0.871660140 0.000000028 3.225108711 0.000000001 1.015045231 2.610877807 0.000000028 7.217645362 3.135971112 0.597205353 0.000004874 0.965404519 18.399699327 0.000069850 1.107944183 0.000000001 2.730073726 7.391053482 0.000202277 13.926435741 4.042085330 1.201259481 0.998626457 0.798382091 0.000000005 0.000000002 0.000000003 0.000000028 0.091687979 0.000000033 0.662234703 0.000000003 0.815008444 0.703130574 0.241539775 0.612849552 0.000000028 0.000002488 0.000000002 0.228675498 0.000000003 5.388093757 0.397491762 5.024929077 2.200389666 1.467677215 0.000000121 3.031269871 0.357656484 0.000000020 0.499962172 0.682822385 0.000000776 0.020008915 0.000001031 0.000952444 0.000000908 0.000012554 0.000000064 0.000000002 0.000000007 0.000000060 3.405159266 3.455703774 2.160990702 0.701258158 0.000000001 0.159840853 0.000000003 0.000000028 0.000000003 0.000000002 0.000000002 0.000000003 0.407056754 2.850889912 0.000047375 0.743572671 1.948477002 0.277767043 0.000000002 0.000000003 0.000000028 0.395888949 0.000000002 0.000000002 0.000000003 0.000000105 1.750009062 0.000013507 0.443902277 0.000000001 1.664983837 0.521087791 0.288325423 0.740535623 19.102843538 0.466333697 0.001505894 1.110843864 2.463537037 0.000000502 0.000000014 0.360304368 0.079456398 0.285276821 0.410338983 8.068755170 0.192426359 2.076850421 0.000024694 2.729707375 0.000000913 0.034698135 0.000320245 0.013909043 4.476170481 0.106984570 1.118182880 9.961043478 0.000000218 0.265767238 10.755661931 0.000000001 1.770590908 1.063101444 0.000000003 0.000000028 0.000000003 0.000000002 2.356347801 0.000000003 0.000450418 0.949203127 0.000000002 0.000000003 0.000000001 0.000000002 0.884576592 0.000000002 0.000000132 0.000691938 0.000000002 0.536511879 14.619939418 0.000000003 0.000000002 0.000000002 3.176063753 0.351049164 0.463489748 0.146042937 0.618255901 2.294382412 0.000000002 0.151942272 0.000000002 0.000000008 4.576966629 0.000000001 0.000000002 0.000000003 0.000000028 0.000001865 0.000024884 0.000002774 0.000000003 13.058323001 2.600349198 0.000000010 6.375685300 1.989696378 0.000000002 0.000000002 0.876102153 0.633582649 0.326833567 0.066851700 0.094187200 0.050607400 0.028908400 0.003578640 0.035698900 0.059437200 0.049143000 0.031722600 0.050487800 0.066208800 0.062476900 0.030187500 0.071450600 0.055398100 0.063255800 0.049040400 0.012928700 0.042775900 0.075654500