Protein MFF

Heterotachy (covarion) test results

Clades tested	Log Lh difference	p-value of difference
All clades	157.0897953192	0
Primates and Rodents clades	37.8702868727996	1.192e-07

Alignment variation features

Conservative sites proportion	Intermediate sites proportion	Variable sites proportion	Conservative sites heterotachy weight	Intermediate sites heterotachy weight	Variable sites heterotachy weight
0.17	0.416	0.414	0.296	0.424	0.28

Site diversity ≤ 0.125	0.125 < Site diversity ≤ 0.25	0.25 < Site diversity ≤ 0.375	0.375 < Site diversity ≤ 0.5	0.5 < Site diversity ≤ 0.625	0.625 < Site diversity ≤ 0.75	0.75 < Site diversity ≤ 0.875	Site diversity > 0.875
0.298412698412698	0.141269841269841	0.0555555555555556	0.0396825396825397	0.0142857142857143	0.0142857142857143	0.00476190476190476	0.431746031746032

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Empirical model for relative rates of amino acid substitutions (in PAML format)

0.165841874 0.305426367 0.000067728 0.168757658 0.024188160 2.101573447 0.005749304 15.622814347 1.057278729 0.741391411 0.810653615 1.754724105 0.149627824 0.210204976 0.000423746 0.178063384 0.000005732 0.225331731 5.769225739 0.175658546 1.276047187 2.750779771 1.621774518 0.727968718 2.226637256 0.006635583 0.053092098 2.093808642 0.000241528 5.412793612 3.683890540 2.288278195 0.507882611 11.353118989 0.354994715 0.141626005 0.000193177 0.000001584 0.357016592 0.180328737 3.073270748 0.000001116 0.235082411 0.011610476 0.000000448 0.174976328 0.353345093 0.125969689 0.030870602 1.048406986 0.159703019 0.040011185 0.051947528 1.295808687 2.159582896 0.170424418 4.730269551 2.235994195 0.203180132 0.000020796 2.411808582 3.673617167 0.000009026 0.000019813 0.426445839 0.029048416 0.754220508 0.064510754 0.004332883 0.143235626 1.013354288 0.619351863 0.083563767 0.421655516 0.000000210 6.442391281 3.344711093 1.692293260 0.066152389 0.004386532 0.037366303 0.163172154 0.007445702 0.000005924 0.340518530 0.001153140 1.059464428 1.039378627 4.899400397 0.072522778 0.000012008 1.902654005 0.346578776 0.366321523 0.000054644 1.003103817 1.698622070 0.000000050 0.000334613 2.297694560 0.012536261 1.663852322 0.612278720 0.000000924 0.005281972 1.897334856 0.377419614 3.857996223 0.113555557 3.485234103 0.471414831 0.075435934 2.272339567 1.119943107 0.221632443 0.531845506 0.470679055 0.533493498 0.122721039 2.795695380 6.247827782 0.533282580 2.015886467 0.005383229 2.429198029 0.150442037 0.108039090 0.616366085 1.966640650 2.419287840 0.444821514 1.452468525 3.484131544 0.600233552 1.312466123 3.710442205 0.188865991 1.371571813 0.000000002 0.000000002 3.781819659 0.000000002 0.000000002 1.738545195 0.000147353 0.000000010 0.651861353 0.000000004 0.697101374 1.784382719 0.000000001 0.351364751 0.393293553 0.000012377 0.130088819 0.378124980 1.432984006 26.370503650 0.000007879 0.000000025 0.000000048 7.332282104 0.005464446 0.383449464 0.000000133 0.000000742 9.136509083 0.000012873 0.565005902 0.368338954 0.000000025 4.492021277 0.000292004 0.000112001 0.000062621 4.953725811 0.000089950 0.288497626 1.171718854 0.170926257 7.954285592 1.521311138 0.366979491 2.420734319 1.401917588 0.370318692 0.385392718 0.173472565 0.380338945 0.620961996 0.071816000 0.080782500 0.048028300 0.045878600 0.008125480 0.050946000 0.064906600 0.042628400 0.025240300 0.046703000 0.091377100 0.025584100 0.028720500 0.026032700 0.075825500 0.110130000 0.061672000 0.009812800 0.019790100 0.065999400