Propertites of Site partitioning Phylogeny of ATPAF1 proteins
Natural logarithm of 'Amino acids -' over 'Residue solvent accessibilities -' based tree branch lengths ratios;
100 iteration of random 50%-alignment jackknife

Inner branch by (daughter) node	Median of branch length from		Mean of logarithmic ratios	Median of logarithmic ratios	Q1 or 25% quantile of logarithmic ratios	Q3 or 75% quantile of logarithmic ratios	Comparing of branch ratios to general population of logarithmic ratios for Inner tree branches
	Amino acids - based tree	Residue solvent accessabilities - based tree					Difference, U-test	Cliff's delta	Normalized p-value, U-test (Holm correction for multiple tests)
N55	2.0371e-06	0.0301302235	7.96380	9.47485	7.21905	10.64503	Greater	0.70315	1.21e-14
N39	0.0050679129	0.1020273134	5.11582	3.51369	2.16947	9.74919	Greater	0.57139	1.21e-14
N28	0.0088172353	0.2197612052	3.65714	3.43323	2.44035	4.45281	Greater	0.55822	1.21e-14
N25	2.556e-06	0.0492546955	6.17421	8.44300	1.12913	10.68086	Greater	0.53109	1.21e-14
N3	0.0114066837	0.6123481039	4.55885	3.74201	1.93993	5.60399	Greater	0.50692	1.21e-14
N54	0.0019973251	0.0295539581	4.25451	3.15848	1.95314	7.14200	Greater	0.49688	1.21e-14
N37	0.0155386259	0.1317205277	2.71002	2.65822	1.68357	3.57545	Greater	0.39470	1.21e-14
N13	0.2402915204	3.1910280983	2.91371	3.23626	1.45868	4.51053	Greater	0.38897	1.21e-14
N40	2.7955e-06	0.0084205907	5.06675	7.60540	0.60604	9.44950	Greater	0.38053	1.21e-14
N47	0.0014768289	0.0204758545	4.05247	2.88129	1.13379	8.60299	Greater	0.37937	1.21e-14
N16	0.0378015039	0.273476784	2.19394	2.14090	1.56578	2.78573	Greater	0.30231	1.21e-14
N15	0.3615214603	3.1384912613	2.17186	2.39558	1.09429	3.38045	Greater	0.26033	1.21e-14
N27	0.0540896868	0.2171437866	2.01690	1.89031	1.25812	2.63981	Greater	0.23803	1.21e-14
N42	0.041824373	0.2237336601	2.73567	2.20556	0.38442	3.88588	Greater	0.21922	1.21e-14
N53	0.0265153939	0.1735237349	2.03301	2.14974	0.87877	3.26031	Greater	0.21539	1.21e-14
N49	0.0208792547	0.1384982252	1.92844	1.80184	1.22586	2.49825	Greater	0.21273	1.21e-14
N41	0.0043138848	0.0466762899	2.57567	2.07401	0.75039	3.45762	Greater	0.20999	1.21e-14
N17	0.0271967527	0.1525143482	1.88802	1.86612	0.88493	2.79507	Greater	0.18097	1.21e-14
N32	0.0131137161	0.0571531725	3.19114	1.55816	-0.14086	9.16733	Greater	0.13221	1.78776e-14
N36	0.0155993358	0.1041839375	1.78188	1.73334	0.65817	2.78114	Greater	0.13207	8.1632e-14
N7	0.1108424548	0.890551074	1.70529	1.89791	0.34604	3.11849	Greater	0.12516	6.6598e-13
N34	0.0326954493	0.1726234523	1.57785	1.71742	0.65266	2.53589	Greater	0.09994	2.3472e-08
N2	0.0671205632	0.3258066542	1.51943	1.58445	0.79191	2.30346	Greater	0.09112	4.378e-07
N48	0.0824536464	0.1735782829	1.58795	1.73881	-0.25115	3.12088	Greater	0.07202	7.571e-05
N45	0.0271195999	0.1114250756	1.45725	1.38319	0.90334	1.94086	Greater	0.06544	0.00038457
N26	0.041297283	0.1390214717	1.63257	1.40907	0.33811	2.72258	Greater	0.06504	0.00045648
N51	0.0080201958	0.0165284146	1.66287	1.38603	0.43500	2.40259	Greater	0.06421	0.00060298
N4	0.0154402608	0.0746602496	1.45701	1.37194	0.41522	2.52718	Greater	0.05229	0.006294
N30	0.1331680062	0.2498089743	1.49904	1.47768	-0.73602	3.11318	Lesser	-0.00552	0.3702
N46	0.0054706308	0.0311416009	1.18754	1.20693	0.54384	1.85047	Lesser	-0.02047	0.2518
N24	0.1763621055	1.5670208696	1.19916	1.10956	0.35819	1.98793	Lesser	-0.02436	0.21498
N38	0.1434330462	0.1748290472	1.15783	1.13603	0.36071	1.86260	Lesser	-0.03505	0.07048
N5	0.0632191363	0.4726515028	1.14475	1.11096	-0.40804	2.60650	Lesser	-0.04529	0.016285
N19	0.0923340233	0.2031271442	0.95485	0.85352	-0.15971	1.86574	Lesser	-0.11262	8.6814e-11
N43	0.0588019196	0.2098713402	0.75295	0.74280	-0.58670	2.24547	Lesser	-0.12925	8.1632e-14
N50	0.0086044674	0.0105723834	0.50015	0.65394	-1.33601	2.50638	Lesser	-0.12937	7.0074e-14
N18	0.1383911944	0.1649053409	0.79848	0.74170	-0.18656	1.81219	Lesser	-0.14270	1.21e-14
N35	0.0987984208	0.1742923612	0.69426	0.57622	0.00266	1.29200	Lesser	-0.19290	1.21e-14
N33	0.0331478726	0.0675020286	0.05377	0.49193	-1.37347	2.08472	Lesser	-0.20401	1.21e-14
N10	1.0595805732	1.8018318079	0.52389	0.66347	-0.53252	1.66401	Lesser	-0.20661	1.21e-14
N44	0.0176933785	0.0179276862	-0.26095	0.46167	-1.14565	1.92257	Lesser	-0.21271	1.21e-14
N1	0.1536126525	0.2345763571	0.37626	0.39964	-0.89862	1.88225	Lesser	-0.22620	1.21e-14
N52	0.0065123093	0.006136725	0.16002	0.39600	-0.76926	1.64430	Lesser	-0.24042	1.21e-14
N23	0.1995007649	0.4560838473	0.40252	0.33139	-0.84688	1.55099	Lesser	-0.25165	1.21e-14
N12	0.3533769409	0.4673395035	0.38050	0.35846	-0.38277	1.05257	Lesser	-0.28203	1.21e-14
N14	0.8073653551	3.106928113	-0.23902	0.20550	-1.91602	1.62576	Lesser	-0.30202	1.21e-14
N20	0.3582425752	0.3544995907	0.00297	0.04622	-0.91400	0.98709	Lesser	-0.36466	1.21e-14
N11	0.78827293	0.639350989	-0.28298	-0.37436	-1.35050	0.72003	Lesser	-0.43769	1.21e-14
N8	0.1089923457	0.0623274116	-0.54978	-0.61662	-1.63778	0.38297	Lesser	-0.49652	1.21e-14
N6	0.1858106241	0.0591629908	-0.79697	-0.89226	-1.84908	0.09428	Lesser	-0.54955	1.21e-14
N9	0.4662574045	0.2318417582	-0.73775	-0.90275	-1.80768	0.18076	Lesser	-0.55018	1.21e-14
N29	0.2274097775	0.1005015927	-0.91735	-0.89482	-1.83296	0.11106	Lesser	-0.58511	1.21e-14
N31	0.0213229942	0.0081341972	-4.24250	-7.32608	-8.54882	0.65526	Lesser	-0.58693	1.21e-14
N21	0.3489354538	0.1924221707	-0.86246	-0.92302	-1.44411	-0.37095	Lesser	-0.64665	1.21e-14
N22	0.277687667	0.0834687388	-1.14403	-1.17705	-1.97536	-0.28310	Lesser	-0.65553	1.21e-14