Propertites of Site partitioning Phylogeny of NDUFA4 proteins
Natural logarithm of 'Amino acids -' over 'Residue solvent accessibilities -' based tree branch lengths ratios;
100 iteration of random 50%-alignment jackknife

Inner branch by (daughter) node	Median of branch length from		Mean of logarithmic ratios	Median of logarithmic ratios	Q1 or 25% quantile of logarithmic ratios	Q3 or 75% quantile of logarithmic ratios	Comparing of branch ratios to general population of logarithmic ratios for Inner tree branches
	Amino acids - based tree	Residue solvent accessabilities - based tree					Difference, U-test	Cliff's delta	Normalized p-value, U-test (Holm correction for multiple tests)
N90	2.653e-06	0.4326962913	11.23656	10.83020	10.24324	12.39688	Greater	0.91335	2.2e-14
N91	2.3479e-06	0.1391625115	10.10364	10.29392	9.33878	10.97711	Greater	0.87100	2.2e-14
N42	2.4966e-06	2.4930936215	10.40696	11.94829	6.29146	13.92788	Greater	0.83209	2.2e-14
N37	2.0431e-06	0.0248588698	8.91638	9.07542	8.53718	9.50544	Greater	0.80925	2.2e-14
N57	2.4483e-06	3.044250486	8.51363	10.46856	3.47368	11.74148	Greater	0.74657	2.2e-14
N56	2.7279e-06	2.8416925279	8.55190	9.23936	4.20141	12.30578	Greater	0.72455	2.2e-14
N95	0.013284893	0.6278909815	5.92519	5.81255	2.57497	7.40001	Greater	0.59422	2.2e-14
N19	2.0608e-06	0.0167453036	6.01370	7.73458	1.31148	8.74412	Greater	0.54096	2.2e-14
N69	0.0152374559	0.0790975023	5.02615	2.26090	1.50436	9.88978	Greater	0.51000	2.2e-14
N70	2.0449e-06	0.0223439012	5.65661	8.42386	1.04736	9.20129	Greater	0.50467	2.2e-14
N10	0.007119315	0.0637293778	4.60071	2.80277	1.57495	8.98925	Greater	0.49501	2.2e-14
N92	2.3421e-06	0.0083614509	5.75333	6.24367	0.82758	10.90445	Greater	0.47950	2.2e-14
N45	0.7008226116	5.9382444956	4.09967	2.76591	2.05514	6.10535	Greater	0.45460	2.2e-14
N38	2.3001e-06	0.0242431421	5.21507	6.94525	0.87075	9.47306	Greater	0.44281	2.2e-14
N96	2.3272e-06	0.0135135224	5.52804	1.22869	0.71965	10.82611	Greater	0.43192	2.2e-14
N75	1.8247e-06	0.1660224562	5.61742	5.01892	0.69932	13.55460	Greater	0.40219	2.2e-14
N79	0.0171135765	2.3340116051	3.79181	4.50303	0.75818	5.81409	Greater	0.34686	2.2e-14
N78	0.0185310713	2.3340117326	3.49482	4.29994	0.54080	5.52126	Greater	0.32325	2.2e-14
N67	2.0444e-06	2.8319e-06	3.40849	1.19673	0.75753	8.85802	Greater	0.31346	2.2e-14
N15	0.1412782302	1.4616252081	2.65857	2.27315	0.85163	4.40834	Greater	0.31331	2.2e-14
N22	0.0678874867	5.6720800596	3.49804	5.59529	0.33382	6.37448	Greater	0.30935	2.2e-14
N28	0.0063651638	0.1398605913	2.65291	2.19180	0.92284	3.55257	Greater	0.30887	2.2e-14
N94	0.0115663719	0.0363882778	3.39639	1.32085	0.47718	8.17178	Greater	0.27990	2.2e-14
N39	0.0238315511	0.1073448369	1.56790	1.53223	1.11877	1.99149	Greater	0.27936	2.2e-14
N36	0.0697029518	0.5228004146	2.33501	1.85854	0.65218	4.10065	Greater	0.26989	2.2e-14
N9	2.2361e-06	0.0116504783	3.18916	1.12975	0.54741	8.51793	Greater	0.24151	2.2e-14
N50	0.0096441083	0.0194719546	3.32450	0.83689	0.04037	8.38082	Greater	0.22768	2.2e-14
N100	0.5503644396	3.2674169414	1.91158	2.15631	0.45459	3.84156	Greater	0.21486	2.2e-14
N98	0.0346612071	0.1166841612	1.83929	2.30199	-0.09342	4.68164	Greater	0.17860	2.2e-14
N7	0.0384837102	0.968281601	1.81614	3.10455	-0.48429	4.46411	Greater	0.14369	2.2e-14
N55	0.0329106673	0.074883808	1.24224	1.27031	0.35937	2.30925	Greater	0.14178	9.4612e-14
N76	1.9295e-06	2.0868e-06	2.36915	1.10782	-7.35249	6.83200	Greater	0.14134	2.2e-14
N46	2.0371e-06	2.631e-06	0.93889	0.95586	0.70598	1.18830	Greater	0.12480	2.58e-11
N93	1.2411461093	6.3913052299	1.43823	1.17472	0.13013	2.60110	Greater	0.12449	9.7604e-13
N48	0.0352862374	1.0685261253	1.55400	3.51196	-0.95129	5.45173	Greater	0.11535	5.0544e-11
N30	0.0835969601	5.2640709057	1.74045	0.72189	-0.59394	3.47077	Greater	0.07521	6.6276e-05
N2	2.3572e-06	2.4747e-06	0.81688	0.82455	0.57435	1.05111	Greater	0.07293	0.0020706
N71	2.449e-06	2.3923e-06	0.79268	0.81268	0.52783	1.08231	Greater	0.06752	0.00176958
N24	0.0461661046	0.0709241047	1.08426	3.29282	-1.89918	5.45923	Greater	0.06107	0.0020706
N86	0.1350783342	0.0720922632	1.51324	1.06020	-2.79540	6.30645	Greater	0.05967	0.0025335
N77	2.3443e-06	2.4747e-06	0.76291	0.76615	0.48535	1.04233	Greater	0.05429	0.023023
N16	0.0129588365	0.01594748	1.37220	0.68969	-1.18588	6.50317	Greater	0.04656	0.030924
N53	0.0151267222	0.0618853757	0.67349	0.85037	0.02697	1.55396	Greater	0.03948	0.1137
N13	0.0313020048	0.0837161069	0.80931	0.69660	0.03569	1.43746	Greater	0.03319	0.26523
N66	2.4443e-06	0.0109020712	0.97569	0.72847	-1.00188	7.55912	Greater	0.02738	0.4
N25	0.0014210636	0.0212197087	0.84094	0.97952	-1.18499	2.86608	Greater	0.02712	0.4
N59	0.0470206331	0.0837251345	0.72130	0.68630	-0.02048	1.51143	Greater	0.02004	0.595
N65	2.0761e-06	2.7082e-06	0.14779	0.78257	-6.06242	1.37017	Lesser	-0.00829	0.595
N5	0.0263008645	0.0622429375	0.53362	0.60462	-0.10711	1.21538	Lesser	-0.01566	0.595
N51	0.0237793086	0.0383227608	0.54950	0.56343	0.03688	1.10041	Lesser	-0.01790	0.595
N88	0.0403103669	0.1062747641	0.62613	0.46887	-0.93573	2.90554	Lesser	-0.01881	0.595
N44	2.6751e-06	0.0137824864	0.53446	0.69541	-7.19903	5.58290	Lesser	-0.02162	0.58176
N80	0.116573992	0.3613185055	0.58267	0.40497	-0.43390	1.25611	Lesser	-0.04492	0.041679
N1	0.0198201692	0.0228381802	0.35552	0.52690	-0.04458	0.95905	Lesser	-0.05713	0.020594
N21	0.0260385758	0.0308581734	-0.25938	0.65564	-5.22160	1.84608	Lesser	-0.06400	0.00114589
N18	0.0184421442	0.0316631158	0.44957	0.34105	-0.25890	0.92236	Lesser	-0.07616	0.0008296
N43	0.011753564	2.7593e-06	-0.04939	0.31091	-7.46162	5.55963	Lesser	-0.08702	1.88562e-06
N6	0.0319938124	0.0265325365	0.21874	0.25999	-0.42618	0.90124	Lesser	-0.10831	4.899e-08
N60	2.2131e-06	0.0035000754	-0.67139	0.28445	-6.17513	5.73101	Lesser	-0.12743	2.60091e-13
N72	0.008570943	2.3888e-06	-1.21627	0.59988	-6.77168	1.06312	Lesser	-0.14214	2.2e-14
N4	0.0181908886	0.0153552289	-0.69153	0.15120	-7.24818	1.21151	Lesser	-0.15568	2.2e-14
N81	0.0393620031	0.05319402	0.11935	-0.12055	-0.92604	0.82260	Lesser	-0.15644	2.2e-14
N35	0.1186335784	5.4248723484	-0.97921	-0.39631	-4.03139	2.80907	Lesser	-0.16333	2.2e-14
N62	0.0232432875	0.0057998359	-0.53730	-0.66633	-6.69728	5.08693	Lesser	-0.17432	2.2e-14
N97	0.0115952606	0.0041298742	-1.11024	0.18468	-7.14413	1.15261	Lesser	-0.17578	2.2e-14
N32	0.0466809258	0.0642318727	-0.09755	-0.07026	-0.66021	0.52788	Lesser	-0.19196	2.2e-14
N3	0.3342484337	0.0156419408	-1.44258	-0.38098	-5.40749	7.11504	Lesser	-0.19237	2.2e-14
N26	0.0112405081	0.0062231079	-0.38940	-0.83805	-2.61083	1.12810	Lesser	-0.19246	2.2e-14
N73	0.0158668597	0.0152156066	-0.90146	0.03955	-1.05473	0.81158	Lesser	-0.20471	2.2e-14
N82	0.0532153965	0.0531940705	-0.13467	-0.27098	-0.98095	0.49733	Lesser	-0.20860	2.2e-14
N87	0.4358949094	0.1842580871	-1.61244	-1.17382	-3.89462	2.43044	Lesser	-0.21894	2.2e-14
N64	0.0043400409	2.4866e-06	-1.77416	0.12616	-7.13314	1.06513	Lesser	-0.22842	2.2e-14
N20	0.0181852557	0.0152493256	-1.80456	-0.16071	-7.37457	1.23192	Lesser	-0.22939	2.2e-14
N99	0.0548838672	0.0788142866	-1.05087	-0.47964	-2.13952	1.04676	Lesser	-0.23343	2.2e-14
N85	0.072625871	0.0772459057	-0.29973	-0.69130	-1.61202	0.49460	Lesser	-0.23521	2.2e-14
N68	0.0093604451	0.0107936719	-1.71456	-0.43037	-7.23188	0.75835	Lesser	-0.27312	2.2e-14
N27	0.0270132325	0.026499088	-1.67547	-0.76722	-2.98214	0.93538	Lesser	-0.27952	2.2e-14
N83	0.0652426086	0.0531938685	-0.44399	-0.51194	-1.16422	0.19062	Lesser	-0.28128	2.2e-14
N41	0.4270482832	0.0387142426	-1.77145	-0.86200	-5.04894	0.72790	Lesser	-0.28880	2.2e-14
N31	0.074304695	0.0567392273	-0.62390	-0.65641	-1.46357	0.03664	Lesser	-0.30344	2.2e-14
N34	0.1047992213	0.0792156365	-1.11036	-0.85483	-1.92363	-0.12288	Lesser	-0.33904	2.2e-14
N11	0.007018588	2.4218e-06	-2.91534	-5.84818	-7.21355	0.81826	Lesser	-0.34882	2.2e-14
N12	0.0162511142	0.0015876726	-2.50783	-1.41673	-7.37621	0.38031	Lesser	-0.36374	2.2e-14
N61	0.1744383772	0.0131864772	-2.23482	-2.24657	-4.69806	0.31149	Lesser	-0.36832	2.2e-14
N14	0.0373046415	0.0188085916	-1.95696	-0.88402	-2.40677	0.10400	Lesser	-0.37653	2.2e-14
N63	0.0160620012	0.0048026956	-3.33205	-4.43158	-8.33811	0.86586	Lesser	-0.39813	2.2e-14
N49	0.0128963988	2.6795e-06	-3.23644	-5.47460	-7.56886	0.61959	Lesser	-0.40566	2.2e-14
N58	0.0137547088	2.7221e-06	-3.51286	-5.71617	-7.77218	0.20592	Lesser	-0.44443	2.2e-14
N29	0.1172508894	4.2088731233	-3.50084	-2.33382	-9.29843	-0.00136	Lesser	-0.45368	2.2e-14
N84	0.2321662386	0.0999492711	-1.30643	-1.14805	-1.77889	-0.75019	Lesser	-0.46445	2.2e-14
N47	0.0210495798	2.7152e-06	-3.61110	-4.17028	-8.01365	0.02038	Lesser	-0.47080	2.2e-14
N89	0.1399272537	0.117713825	-3.09473	-2.16755	-4.62744	-0.13895	Lesser	-0.48979	2.2e-14
N52	0.0268272406	0.0133000846	-3.90765	-2.26590	-8.09708	-0.24066	Lesser	-0.53148	2.2e-14
N8	0.0465584548	0.0116814805	-3.86459	-3.54049	-7.28040	-0.69495	Lesser	-0.54037	2.2e-14
N33	0.084127554	0.0537657063	-3.74274	-1.41478	-8.82302	-0.29643	Lesser	-0.55303	2.2e-14
N54	0.0227986026	2.4792e-06	-4.72214	-7.27619	-8.10143	-0.01350	Lesser	-0.55903	2.2e-14
N17	0.0546968612	0.0091080918	-3.91909	-2.79307	-8.42096	-0.94080	Lesser	-0.56398	2.2e-14
N74	0.01206445	2.4e-06	-5.23477	-7.31360	-7.90336	0.19102	Lesser	-0.56452	2.2e-14
N23	0.0523797303	2.4629e-06	-5.42468	-8.29100	-9.06551	-0.89685	Lesser	-0.63307	2.2e-14
N40	0.0241274451	2.155e-06	-8.09371	-8.14714	-8.54013	-7.66276	Lesser	-0.85568	2.2e-14