the resource depositing the results of molecular evolution analysis for

proteins located in mitochondria

Results of individual protein analysis Results of integrative (by-clade) analysis

Supplementary information 1: Why at least 20 residue type categories are required for robust analysis of evolution on inner tree branches?

Supplementary information 2: Integrative data on matrices of relative rates of residue solvent accessibilities changes.

Supplementary information 3: Fitting the number of site diversity categories covering at least 5% alignment sites for comparison between heterotachy model and site partitioning model.

Supplementary information 4: Checking the robustness of heterotachy model results by analysis based on 10 RSA categories.

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